plotRegions: CopyNumber450kCancer

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

CopyNumber450kCancer

Description

The MethylMaster version of the CopyNumber450kCancer() function from "CopyNumber450kCancer.R

functions for plotting::: —to plot————- this uses the regions file: Chromosome should be in this format: "chr1" similar to the original function, this one use only the cutoff This function plots the chromosomal regions (segments) with colored segments based on the cutoff. This function was built based on "plotSample" function in "CopyNumber450k" package (http://www.bioconductor.org/packages/release/ bioc/html/CopyNumber450k.html), and uses a modified "minor.tick" function in Hmisc" package to draw small tick in the plots."

Usage

plotRegions(object, chr, start, end, cutoff = 0.1, markers = 20, ...)

Arguments

object	The object parameter
chr	The chr parameter
start	The start parameter
end	The end parameter
cutoff	The cutoff parameter
markers	The markers parameter
...	Additional parameters passed to opyNumber450kCancer

Value

Return plot

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.