assign_ss: Assign introns donor and acceptor splice sites consensus

In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database

Assign introns donor and acceptor splice sites consensus

Description

This function takes a data frame of intron coordinates and the full genome sequence of a particular species and return a data frame with additional 2 columns for indicating the donor and acceptor splice sites for each intron.

Usage

assign_ss(input,genome)

Arguments

input	The name of the data frame containing intron coordinates
genome	The full genome sequence of a particular species. The default value is the human genome sequence of the hg38 assembly

Value

A data frame with additional 2 columns for donor and acceptor splice sites consensus

Examples

intr_splice_sites <- assign_ss(introns_df, genome=BSgenome.Hsapiens.UCSC.hg38)

monahton/GencoDymo documentation built on Dec. 13, 2024, 1:23 a.m.