trans_freq: Extract numbers of transcripts containing a single or...
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
trans_freq R Documentation
Extract numbers of transcripts containing a single or multiple exons
Description
This function takes a gtf file of GENCODE annotations as input. It calculates the number of different exons of a transcript. Then, the output is a data frame containing the number of transcripts having 1,2,3... or several exons and their percentage.
Usage
trans_freq(input)
Arguments
input
The name of the downloaded gtf file from GENCODE website
Value
A data frame of number of transcripts and their percentage
See Also
genes_freq
Examples
df <- load_gtf("gencode.v27.lncRNAs.gtf")
trans_freq(df)
monahton/GencoDymo documentation built on Dec. 13, 2024, 1:23 a.m.
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| trans_freq | R Documentation |
Extract numbers of transcripts containing a single or multiple exons
Description
This function takes a gtf file of GENCODE annotations as input. It calculates the number of different exons of a transcript. Then, the output is a data frame containing the number of transcripts having 1,2,3... or several exons and their percentage.
Usage
trans_freq(input)
Arguments
input |
The name of the downloaded gtf file from GENCODE website |
Value
A data frame of number of transcripts and their percentage
See Also
genes_freq
Examples
df <- load_gtf("gencode.v27.lncRNAs.gtf")
trans_freq(df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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