spliced_trans_length: Calculate the length of splices transcripts
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
Description
Usage
Arguments
Value
Examples
View source: R/spliced_trans_length.R
Description
This function takes a data frame of GENCODE annotations as input. It calculates the length of the transcripts considering only the length of their corresponding exons.
Usage
1
spliced_trans_length(input)
Arguments
input
The name of the downloaded gtf file from GENCODE website
Value
A data frame of the transcript ids and their length when spliced
Examples
1
2
load_gtf("gencode.v27.lncRNAs.gtf")
spliced_trans_length(gtf_df)
monahton/GencoDymo documentation built on Nov. 29, 2021, 9:16 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/spliced_trans_length.R
Description
This function takes a data frame of GENCODE annotations as input. It calculates the length of the transcripts considering only the length of their corresponding exons.
Usage
1 | spliced_trans_length(input)
|
Arguments
input |
The name of the downloaded gtf file from GENCODE website |
Value
A data frame of the transcript ids and their length when spliced
Examples
1 2 | load_gtf("gencode.v27.lncRNAs.gtf")
spliced_trans_length(gtf_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.