extract_pc: Extract protein-coding genes from GENCODE basic annotation...
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
Description
Usage
Arguments
Value
Examples
Description
This function takes a data frame of basic annotations provided by GENCODE as input. The function extracts from the data frame all the protein-coding genes and gives as an output a data frame in the R Global Environment. The output data frame includes the gene, transcript and exon annotations only.
Usage
1
extract_pc(input)
Arguments
input
The name of the downloaded basic annotation gtf file from GENCODE website
Value
A data frame of protein-coding genes
Examples
1
2
df <- load_gtf("gencode.v27.basic.annotation.gtf")
extract_pc(df)
monahton/GencoDymo documentation built on Nov. 29, 2021, 9:16 a.m.
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Description Usage Arguments Value Examples
Description
This function takes a data frame of basic annotations provided by GENCODE as input. The function extracts from the data frame all the protein-coding genes and gives as an output a data frame in the R Global Environment. The output data frame includes the gene, transcript and exon annotations only.
Usage
1 | extract_pc(input)
|
Arguments
input |
The name of the downloaded basic annotation gtf file from GENCODE website |
Value
A data frame of protein-coding genes
Examples
1 2 | df <- load_gtf("gencode.v27.basic.annotation.gtf")
extract_pc(df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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