extract_pc | R Documentation |
This function takes a data frame of basic annotations provided by GENCODE as input. The function extracts from the data frame all the protein-coding genes and gives as an output a data frame in the R Global Environment. The output data frame includes the gene, transcript and exon annotations only.
extract_pc(input)
input |
The name of the downloaded basic annotation gtf file from GENCODE website |
A data frame of protein-coding genes
df <- load_gtf("gencode.v27.basic.annotation.gtf")
extract_pc(df)
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