gencode_compare: Compare number of annotations between 2 different releases...
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
Description
Usage
Arguments
Value
Examples
View source: R/gencode_compare.R
Description
This function compares the number of annotated genes, transcripts, exons or introns from 2 data frames. It is used to compare the different annotations between different releases from GENCODE
Usage
1
gencode_compare(df1, df2, type)
Arguments
df1
The name of the first data frame of a particular release from GENCODE
df2
The name of the second data frame of a particular release from GENCODE
type
A string specifying the genetic element to be compared
Value
Delta: The difference between annotated numbers of a particular genetic element.
Percentage: the percentage of delta
Examples
1
2
3
4
5
6
data1 <- load_gtf("gencode.v27.lncRNAs.gtf")
data2 <- load_gtf("gencode.v28.lncRNAs.gtf")
gencode_compare(data1, data2, type = "gene")
gencode_compare(data1, data2, type = "transcript")
gencode_compare(data1, data2, type = "exon")
gencode_compare(data1, data2, type = "intron")
monahton/GencoDymo documentation built on Nov. 29, 2021, 9:16 a.m.
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Description Usage Arguments Value Examples
View source: R/gencode_compare.R
Description
This function compares the number of annotated genes, transcripts, exons or introns from 2 data frames. It is used to compare the different annotations between different releases from GENCODE
Usage
1 | gencode_compare(df1, df2, type)
|
Arguments
df1 |
The name of the first data frame of a particular release from GENCODE |
df2 |
The name of the second data frame of a particular release from GENCODE |
type |
A string specifying the genetic element to be compared |
Value
Delta: The difference between annotated numbers of a particular genetic element. Percentage: the percentage of delta
Examples
1 2 3 4 5 6 | data1 <- load_gtf("gencode.v27.lncRNAs.gtf")
data2 <- load_gtf("gencode.v28.lncRNAs.gtf")
gencode_compare(data1, data2, type = "gene")
gencode_compare(data1, data2, type = "transcript")
gencode_compare(data1, data2, type = "exon")
gencode_compare(data1, data2, type = "intron")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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