genes_freq: Extract numbers of genes containing single or multiple...

View source: R/freq.R

genes_freqR Documentation

Extract numbers of genes containing single or multiple transcripts

Description

This function takes a data frame of annotations provided by GENCODE as input. It calculates the number of different transcripts of a gene. The output is a data frame containing the number of genes having 1,2,3... or several isoforms and their percentage.

Usage

genes_freq(input)

Arguments

input

The name of the downloaded gtf file from GENCODE website

Value

A data frame of number of genes and their percentage

See Also

trans_freq

Examples

df <- load_gtf("gencode.v27.lncRNAs.gtf")
genes_freq(df)

monahton/GencoDymo documentation built on Dec. 13, 2024, 1:23 a.m.