genes_freq: Extract numbers of genes containing single or multiple...
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
genes_freq R Documentation
Extract numbers of genes containing single or multiple transcripts
Description
This function takes a data frame of annotations provided by GENCODE as input. It calculates the number of different transcripts of a gene. The output is a data frame containing the number of genes having 1,2,3... or several isoforms and their percentage.
Usage
genes_freq(input)
Arguments
input
The name of the downloaded gtf file from GENCODE website
Value
A data frame of number of genes and their percentage
See Also
trans_freq
Examples
df <- load_gtf("gencode.v27.lncRNAs.gtf")
genes_freq(df)
monahton/GencoDymo documentation built on Dec. 13, 2024, 1:23 a.m.
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| genes_freq | R Documentation |
Extract numbers of genes containing single or multiple transcripts
Description
This function takes a data frame of annotations provided by GENCODE as input. It calculates the number of different transcripts of a gene. The output is a data frame containing the number of genes having 1,2,3... or several isoforms and their percentage.
Usage
genes_freq(input)
Arguments
input |
The name of the downloaded gtf file from GENCODE website |
Value
A data frame of number of genes and their percentage
See Also
trans_freq
Examples
df <- load_gtf("gencode.v27.lncRNAs.gtf")
genes_freq(df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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