extract_introns: Extract introns coordinates from a GENCODE gtf file as a data...
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
View source: R/extract_introns.R
extract_introns R Documentation
Extract introns coordinates from a GENCODE gtf file as a data frame.
Description
This function takes a gtf file from GENCODE and returns a data frame in the R Global Environment containing introns coordinates and their position in the transcript.
Usage
extract_introns(input)
Arguments
input
The name of a gtf file from GENCODE
Value
A data frame of intron coordinates
Examples
df <- load_gtf("gencode.v27.lncRNAs.gtf")
introns <- extract_introns(df)
monahton/GencoDymo documentation built on Dec. 13, 2024, 1:23 a.m.
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View source: R/extract_introns.R
| extract_introns | R Documentation |
Extract introns coordinates from a GENCODE gtf file as a data frame.
Description
This function takes a gtf file from GENCODE and returns a data frame in the R Global Environment containing introns coordinates and their position in the transcript.
Usage
extract_introns(input)
Arguments
input |
The name of a gtf file from GENCODE |
Value
A data frame of intron coordinates
Examples
df <- load_gtf("gencode.v27.lncRNAs.gtf")
introns <- extract_introns(df)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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