extract_introns: Extract introns coordinates from a GENCODE gtf file as a data...
In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database
Description
Usage
Arguments
Value
Examples
View source: R/extract_introns.R
Description
This function takes a gtf file from GENCODE and returns a data frame in the R Global Environment containing introns coordinates and their position in the transcript.
Usage
1
extract_introns(input)
Arguments
input
The name of a gtf file from GENCODE
Value
A data frame of intron coordinates
Examples
1
2
df <- load_gtf("gencode.v27.lncRNAs.gtf")
introns <- extract_introns(df)
monahton/GencoDymo documentation built on Nov. 29, 2021, 9:16 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/extract_introns.R
Description
This function takes a gtf file from GENCODE and returns a data frame in the R Global Environment containing introns coordinates and their position in the transcript.
Usage
1 | extract_introns(input)
|
Arguments
input |
The name of a gtf file from GENCODE |
Value
A data frame of intron coordinates
Examples
1 2 | df <- load_gtf("gencode.v27.lncRNAs.gtf")
introns <- extract_introns(df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.