Description Usage Arguments Value See Also Examples
View source: R/extract_strand.R
This function takes a gtf file from GENCODE or the data frame containing extracted introns. It returns as a data frame a specified element; i.e gene, transcript, exon or intron; that are on the reverse strand
1 | extract_minus(input, type)
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input |
The name of the downloaded gtf file from GENCODE website |
type |
A string that specifies the type of element to be reported |
A data frame of elements on the minus strand
1 2 3 4 5 | df <- load_gtf("gencode.v27.lncRNAs.gtf")
extract_minus(df, type = "gene")
extract_minus(df, type = "transcript")
extract_minus(df, type = "exon")
extract_minus(introns_df, type = "intron")
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