extract_plus: Extract elements on the plus strand from a gtf file.

In monahton/GencoDymo: Data Extraction and Manipulation from the GENCODE Database

Extract elements on the plus strand from a gtf file.

Description

This function takes a gtf file from GENCODE or the data frame of extracted introns. It returns as a data frame a specified element; i.e gene, transcript, exon or intron; that are on the forward strand

Usage

extract_plus(input, type)

Arguments

input	The name of the downloaded gtf file from GENCODE website or a data frame of introns
type	A string that specifies the type of element to be reported

Value

A data frame of elements on the plus strand

See Also

extract_minus

Examples

df <- load_gtf("gencode.v27.lncRNAs.gtf")
extract_plus(df, type = "gene")
extract_plus(df, type = "transcript")
extract_plus(df, type = "exon")
extract_plus(df, "intron")

monahton/GencoDymo documentation built on Dec. 13, 2024, 1:23 a.m.