Files in mrbakhsh/HPiP
Host-Pathogen Interaction Prediction
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/FSmethod.R
R/FreqInteractors.R
R/Gold_ReferenceSet.R
R/UP000464024_df.R
R/calculateAAC.R
R/calculateAutocor.R
R/calculateBE.R
R/calculateCTDC.R
R/calculateCTDD.R
R/calculateCTDT.R
R/calculateCTriad.R
R/calculateDC.R
R/calculateF.R
R/calculateKSAAP.R
R/calculateQD_Sm.R
R/calculateTC.R
R/calculateTC_Sm.R
R/corr_plot.R
R/enrich.df.R
R/enrichfindP.R
R/enrichfind_cpx.R
R/enrichfind_hp.R
R/enrichplot.R
R/example_data.R
R/filter_missing_values.R
R/getFASTA.R
R/getHPI.R
R/get_negativePPI.R
R/get_positivePPI.R
R/host_se.R
R/impute_missing_data.R
R/plotPPI.R
R/pred_ensembel.R
R/predicted_PPIs.R
R/run_clustering.R
R/sysdata.rda
R/unlabel_data.R
R/var_imp.R
R/viral_se.R
README.md
data-raw/41586_2020_2286_MOESM5_ESM.xlsx
data-raw/README.md
data-raw/generate_enrich.df.R
data-raw/generate_example_data.R
data-raw/generate_predicted_PPIs.R
data-raw/preprocess_Gold_ReferenceSet.R
data-raw/preprocess_host_se.R
data-raw/preprocess_unlabeldata.R
data-raw/preprocess_viral_se.R
data-raw/retrive_UP000464024_df.R
data/Gold_ReferenceSet.rda
data/UP000464024_df.rda
data/enrich.df.rda
data/example_data.rda
data/host_se.rda
data/predicted_PPIs.rda
data/unlabel_data.rda
data/viral_se.rda
inst/extdata/AAidx.csv
inst/extdata/README.md
inst/extdata/TP_set.csv
inst/extdata/UP000464024.fasta
inst/unitTests/test_calculateAAC.R
inst/unitTests/test_calculateDC.R
inst/unitTests/test_enrich.df.R
inst/unitTests/test_getHPI.R
inst/unitTests/test_get_negativePPI.R
inst/unitTests/test_get_positivePPI.R
inst/unitTests/test_pred_ensembel.R
man/FSmethod.Rd
man/FreqInteractors.Rd
man/Gold_ReferenceSet.Rd
man/UP000464024_df.Rd
man/calculateAAC.Rd
man/calculateAutocor.Rd
man/calculateBE.Rd
man/calculateCTDC.Rd
man/calculateCTDD.Rd
man/calculateCTDT.Rd
man/calculateCTriad.Rd
man/calculateDC.Rd
man/calculateF.Rd
man/calculateKSAAP.Rd
man/calculateQD_Sm.Rd
man/calculateTC.Rd
man/calculateTC_Sm.Rd
man/corr_plot.Rd
man/enrich.df.Rd
man/enrichfindP.Rd
man/enrichfind_cpx.Rd
man/enrichfind_hp.Rd
man/enrichplot.Rd
man/example_data.Rd
man/filter_missing_values.Rd
man/getFASTA.Rd
man/getHPI.Rd
man/get_negativePPI.Rd
man/get_positivePPI.Rd
man/host_se.Rd
man/impute_missing_data.Rd
man/plotPPI.Rd
man/pred_ensembel.Rd
man/predicted_PPIs.Rd
man/run_clustering.Rd
man/unlabel_data.Rd
man/var_imp.Rd
man/viral_se.Rd
tests/runTests.R
vignettes/Figures/CTriad.png
vignettes/Figures/F-1.png
vignettes/Figures/ROC_Curve_new.png
vignettes/Figures/ctd.png
vignettes/Figures/point_plot_new.png
vignettes/Figures/pr-curve_new.png
vignettes/HPiP.bib
vignettes/HPiP_tutorial.Rmd
vignettes/bioinformatics.csl
