calculateTC_Sm: Calculate Tripeptide Composition (TC) Descriptor from...

In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction

Calculate Tripeptide Composition (TC) Descriptor from Biochemical Similarity Classes

Description

This function calculates Tripeptide Composition (TC) descriptor from biochemical similarity classes.

Usage

calculateTC_Sm(x)

Arguments

x	A data.frame containing gene/protein names and their fasta sequences.

Details

calculateTC_Sm

Value

A length 216 named vector for the data input.

Author(s)

Matineh Rahmatbakhsh, [e-mail]

References

Ahmed, I., Witbooi, P., and Christoffels, A. (2018). Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network.Bioinformatics 34, 4159–4164.

Cui, G., Fang, C., and Han, K. (2012). Prediction of protein-protein interactions between viruses and human by an SVM model. BMC bioinformatics, 1–10.

See Also

See calculateTC for Tripeptide Composition descriptor.

Examples

data(UP000464024_df)
x_df <- calculateTC_Sm(UP000464024_df)
head(x_df, n = 2L)

mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.