getHPI: Generating Host-Pathogen Protein-Protein Interaction (HP-PPI)...

In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction

Generating Host-Pathogen Protein-Protein Interaction (HP-PPI) Descriptors

Description

This function calculates Host-Pathogen Protein-Protein Interaction (HP-PPI) descriptors via two approaches

• combine - combine the two descriptor matrix, result has (p1 + p2) columns

• kron.prod - if A has m x n matrix and B is q x p matrix, then the Kronecker product is the code(pm × qn) block matrix

Usage

getHPI(pathogenData, hostData, type = c("combine", "kron.prod"))

Arguments

pathogenData	The pathogen descriptor matrix.
hostData	The host descriptor matrix.
type	The interaction type, one or two of "combine" and "kron.prod".

Details

getHPI

Value

A matrix containing the Host-Pathogen Protein-Protein Interaction (HP-PPI) descriptors.

Author(s)

Matineh Rahmatbakhsh [e-mail]

Examples

x <- matrix(c(1, 2, 3, 1), nrow = 2, ncol = 2, byrow = TRUE)
y <- matrix(c(0, 3, 2, 1), nrow = 2, ncol = 2, byrow = TRUE)
getHPI(x, y, "combine")
getHPI(x, y, "kron.prod")

mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.