calculateQD_Sm: Calculate Quadruples Composition (QC) Descriptor from...
In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction
View source: R/calculateQD_Sm.R
calculateQD_Sm R Documentation
Calculate Quadruples Composition (QC) Descriptor from
Biochemical Similarity Classes
Description
This function calculates Quadruples Composition (QC)
descriptor from biochemical similarity classes.
Usage
calculateQD_Sm(x)
Arguments
x
A data.frame containing gene/protein names and their fasta
sequences.
Details
calculateQD_Sm
Value
A length 1296 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Ahmed, I., Witbooi, P., and Christoffels, A. (2018). Prediction of
human-Bacillus anthracis protein–protein interactions using
multi-layer neural network.Bioinformatics 34, 4159–4164.
Examples
data(UP000464024_df)
x_df <- calculateQD_Sm(UP000464024_df)
head(x_df, n = 2L)
mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.
R Package Documentation
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View source: R/calculateQD_Sm.R
| calculateQD_Sm | R Documentation |
Calculate Quadruples Composition (QC) Descriptor from Biochemical Similarity Classes
Description
This function calculates Quadruples Composition (QC) descriptor from biochemical similarity classes.
Usage
calculateQD_Sm(x)
Arguments
x |
A data.frame containing gene/protein names and their fasta sequences. |
Details
calculateQD_Sm
Value
A length 1296 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Ahmed, I., Witbooi, P., and Christoffels, A. (2018). Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network.Bioinformatics 34, 4159–4164.
Examples
data(UP000464024_df)
x_df <- calculateQD_Sm(UP000464024_df)
head(x_df, n = 2L)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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