calculateCTDT: Calculate CTD Descriptors - Transition (T)
In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction
View source: R/calculateCTDT.R
calculateCTDT R Documentation
Calculate CTD Descriptors - Transition (T)
Description
This function calculates Transition (T) descriptor
for data input.
Usage
calculateCTDT(x)
Arguments
x
A data.frame containing gene/protein names and
their fasta sequences.
Details
calculateCTDT
Value
A length 21 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Dubchak, I., Muchnik, I., Holbrook, S. R., and Kim, S.-H. (1995).
Prediction of protein folding class using global description of
amino acid sequence.
Proc. Natl. Acad. Sci. 92, 8700–8704.
See Also
See calculateCTDC and calculateCTDD
for Composition and Distribution descriptors.
Examples
data(UP000464024_df)
x_df <- calculateCTDT(UP000464024_df)
head(x_df, n = 2L)
mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.
R Package Documentation
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View source: R/calculateCTDT.R
| calculateCTDT | R Documentation |
Calculate CTD Descriptors - Transition (T)
Description
This function calculates Transition (T) descriptor for data input.
Usage
calculateCTDT(x)
Arguments
x |
A data.frame containing gene/protein names and their fasta sequences. |
Details
calculateCTDT
Value
A length 21 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Dubchak, I., Muchnik, I., Holbrook, S. R., and Kim, S.-H. (1995). Prediction of protein folding class using global description of amino acid sequence. Proc. Natl. Acad. Sci. 92, 8700–8704.
See Also
See calculateCTDC and calculateCTDD
for Composition and Distribution descriptors.
Examples
data(UP000464024_df)
x_df <- calculateCTDT(UP000464024_df)
head(x_df, n = 2L)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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