plotPPI: Plot the Predicted PPI

In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction

Plot the Predicted PPI

Description

Plot the predicted PPIs. This function uses the plot function of the igraph.

Usage

plotPPI(
  ppi,
  edge.name = "ensemble_score",
  node.color = "grey",
  edge.color = "orange",
  cex.node = 4,
  node.label.dist = 1.5
)

Arguments

ppi	A data.frame containing protein-protein interactions with edge score.
edge.name	A character string giving an edge attribute name.
node.color	The fill color of the node.
edge.color	The color of the edge.
cex.node	The size of the node.
node.label.dist	The distance of the label from the center of the node.

Details

plotPPI

Value

A PPI plot.

Author(s)

Matineh Rahmatbakhsh, [e-mail]

Examples

df <- data.frame(
    node1 = c("A", "B", "C", "D", "E"),
    node2 = c("C", "E", "E", "E", "A"),
    edge.scores = c(0.5, 0.4, 0.3, 0.2, 0.7)
)
plotPPI(df, edge.name = "edge.scores")

mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.