calculateAAC: Calculate Amino Acid Composition (AAC) Descriptor

In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction

Calculate Amino Acid Composition (AAC) Descriptor

Description

This function calculates Amino Acid Composition (AAC) descriptor for the data input.

Usage

calculateAAC(x)

Arguments

x	A data.frame containing gene/protein names and their fasta sequences.

Details

calculateAAC

Value

A length 20 named vector for the data input.

Author(s)

Matineh Rahmatbakhsh, [e-mail]

References

Dey, L., Chakraborty, S., and Mukhopadhyay, A. (2020). Machine learning techniques for sequence-based prediction of viral–host interactions between SARS-CoV-2 and human proteins. Biomed. J. 43, 438–450.

See Also

See calculateDC and calculateTC for Dipeptide Composition and Tripeptide Composition descriptors.

Examples

data(UP000464024_df)
x_df <- calculateAAC(UP000464024_df)
head(x_df, n = 2L)

mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.