calculateCTDC: Calculate CTD Descriptors - Composition (C)
In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction
calculateCTDC R Documentation
Calculate CTD Descriptors - Composition (C)
Description
This function calculates Composition (C)
descriptor for data input.
Usage
calculateCTDC(x)
Arguments
x
A data.frame containing gene/protein names and
their fasta sequences.
Details
calculateCTDC
Value
A length 21 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Dubchak, I., Muchnik, I., Holbrook, S. R., and Kim, S.-H. (1995).
Prediction of protein folding class using global description of
amino acid sequence.Proc. Natl. Acad. Sci. 92, 8700–8704.
See Also
See calculateCTDT and calculateCTDD
for Transition and Distribution descriptors.
Examples
data(UP000464024_df)
x_df <- calculateCTDC(UP000464024_df)
head(x_df, n = 2L)
mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.
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| calculateCTDC | R Documentation |
Calculate CTD Descriptors - Composition (C)
Description
This function calculates Composition (C) descriptor for data input.
Usage
calculateCTDC(x)
Arguments
x |
A data.frame containing gene/protein names and their fasta sequences. |
Details
calculateCTDC
Value
A length 21 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Dubchak, I., Muchnik, I., Holbrook, S. R., and Kim, S.-H. (1995). Prediction of protein folding class using global description of amino acid sequence.Proc. Natl. Acad. Sci. 92, 8700–8704.
See Also
See calculateCTDT and calculateCTDD
for Transition and Distribution descriptors.
Examples
data(UP000464024_df)
x_df <- calculateCTDC(UP000464024_df)
head(x_df, n = 2L)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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