calculateTC: Calculate Tripeptide Composition (TC) Descriptor

In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction

Calculate Tripeptide Composition (TC) Descriptor

Description

This function calculates Tripeptide Composition (TC) descriptor for data input.

Usage

calculateTC(x)

Arguments

x	A data.frame containing gene/protein names and their fasta sequences.

Details

calculateTC

Value

A length 8,000 named vector for the data input.

Author(s)

Matineh Rahmatbakhsh, [e-mail]

References

Liao, B., Jiang, J.-B., Zeng, Q.-G., and Zhu, W. (2011). Predicting apoptosis protein subcellular location with PseAAC by incorporating tripeptide composition. Protein Pept. Lett. 18, 1086–1092

See Also

See calculateAAC,calculateDC and calculateTC_Sm for Amino Acid Composition, Dipeptide Composition and Tripeptide Composition (TC) Descriptor from Biochemical Similarity Classes.

Examples

data(UP000464024_df)
x_df <- calculateTC(UP000464024_df)
head(x_df, n = 2L)

mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.