calculateDC: Calculate Dipeptide Composition (DC) Descriptor
In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction
calculateDC R Documentation
Calculate Dipeptide Composition (DC) Descriptor
Description
This function calculates Dipeptide Composition (DC)
descriptor for data input.
Usage
calculateDC(x)
Arguments
x
A data.frame containing gene/protein names and their fasta
sequences.
Details
calculateDC
Value
A length 400 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Bhasin, M., and Raghava, G. P. S. (2004).
Classification of nuclear receptors based on amino acid composition
and dipeptide composition. J. Biol. Chem. 279, 23262–23266.
See Also
See calculateAAC and calculateTC
for Amino Acid Composition and Tripeptide Composition descriptors.
Examples
data(UP000464024_df)
x_df <- calculateDC(UP000464024_df)
head(x_df, n = 2L)
mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.
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| calculateDC | R Documentation |
Calculate Dipeptide Composition (DC) Descriptor
Description
This function calculates Dipeptide Composition (DC) descriptor for data input.
Usage
calculateDC(x)
Arguments
x |
A data.frame containing gene/protein names and their fasta sequences. |
Details
calculateDC
Value
A length 400 named vector for the data input.
Author(s)
Matineh Rahmatbakhsh, matinerb.94@gmail.com
References
Bhasin, M., and Raghava, G. P. S. (2004). Classification of nuclear receptors based on amino acid composition and dipeptide composition. J. Biol. Chem. 279, 23262–23266.
See Also
See calculateAAC and calculateTC
for Amino Acid Composition and Tripeptide Composition descriptors.
Examples
data(UP000464024_df)
x_df <- calculateDC(UP000464024_df)
head(x_df, n = 2L)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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