calculateCTriad: Calculate Conjoint Triad Descriptor

In mrbakhsh/HPiP: Host-Pathogen Interaction Prediction

Calculate Conjoint Triad Descriptor

Description

This function calculates Conjoint Triad descriptor for data input.

Usage

calculateCTriad(x)

Arguments

x	A data.frame containing gene/protein names and their fasta sequences.

Details

calculateCTriad

Value

A length 343 named vector for the data input.

Author(s)

Matineh Rahmatbakhsh, [e-mail]

References

Shen, J., Zhang, J., Luo, X., Zhu, W., Yu, K., Chen, K., et al. (2007). Predicting protein–protein interactions based only on sequences information. Proc. Natl. Acad. Sci. 104, 4337–4341.

Examples

data(UP000464024_df)
x_df <- calculateCTriad(UP000464024_df)
head(x_df, n = 2L)

mrbakhsh/HPiP documentation built on March 28, 2023, 4:35 p.m.