README.md

In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes

casereport

Genome graph based case reports

For developers

Manifest of files

| File | Description | | ----------- | ----------- | | wgs.report.rmd | the rmd report to be knitted | | wgs.run.R | the main R script to prepare data and plots | | wgs.casereport.task | new task file | | config.R | the R script of preset colors and other static global variables | | utils.R | the R script of utility functions | | flow.deploy | deploy file | | run.sh | bash script to start running the module |

What to do

In the rmd file organize sections of contents, fill in with text and figures. Figures should be pre-made within the main R script as PNG files and inserted using knitr::include_graphics().

mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.