get_pmkb_tier_table: get_pmkb_tier_table

View source: R/pmkb-utils.R

get_pmkb_tier_tableR Documentation

get_pmkb_tier_table

Description

Internal function to generate a table with a single tier value per gene

The output table includes columns: gene, type, and tier the type takes one of the following values: 'ONC', 'TSG', or 'ONC|TSG'. As of writing this the only gene with 'ONC|TSG' annotation was CDH1

Usage

get_pmkb_tier_table(pmkb_tsv = NA)

Arguments

pmkb_tsv

(character) path to PMKB TSV (if not provided then the default table supplied with the package will be used


mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.