rna_quantile: rna_quantile
In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes
rna_quantile R Documentation
rna_quantile
Description
compute quantile of each transcript
Usage
rna_quantile(tpm.cohort, pair, tpm.pair = NULL)
Arguments
tpm.cohort
file path data.table with id column gene and other columns representing pairs
pair
character pair of interest. must be a column in tpm.cohort if tpm.pair is NULL
tpm.pair
file path of data.table with column gene, pair
Value
data table with column gene and quantile representing expression quantile for the pair of interest relative to rest of cohort
mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.
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| rna_quantile | R Documentation |
rna_quantile
Description
compute quantile of each transcript
Usage
rna_quantile(tpm.cohort, pair, tpm.pair = NULL)
Arguments
tpm.cohort |
file path data.table with id column gene and other columns representing pairs |
pair |
character pair of interest. must be a column in tpm.cohort if tpm.pair is NULL |
tpm.pair |
file path of data.table with column gene, pair |
Value
data table with column gene and quantile representing expression quantile for the pair of interest relative to rest of cohort
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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