fusion.table | R Documentation |
Prepare table of fusion events for displaying
fusion.table( fusions.fname = NULL, complex.fname = NULL, cgc.fname = "/data/cgc.tsv", ev.types = c("qrp", "qpdup", "qrdel", "tic", "bfb", "dm", "chromoplexy", "chromothripsis", "tyfonas", "rigma", "pyrgo", "cpxdm") )
fusions.fname |
(character) file name containing fusion gWalks |
complex.fname |
(character) file name to events |
cgc.fname |
(character) cancer gene census file name |
ev.types |
(character) event types |
gWalk (filtered) with metadata columns: - walk.id - name (e.g. involved genes) - num.aa (total number of aminos) - gene.pc (protein coordinates) - driver (logical, is a gene a driver) - ev.id (complex event IDs overlapping with walk) - ev.type (complex event type overlapping with walk)
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