fusion.wrapper: fusion.wrapper

In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes

fusion.wrapper

Description

Wrapper for fusions

Usage

fusion.wrapper(
  fusions.fname = NULL,
  complex.fname = NULL,
  cvgt.fname = NULL,
  gngt.fname = NULL,
  agt.fname = NULL,
  cgc.fname = "/data/cgc.tsv",
  ev.types = c("qrp", "qpdup", "qrdel", "tic", "bfb", "dm", "chromoplexy",
    "chromothripsis", "tyfonas", "rigma", "pyrgo", "cpxdm"),
  height = 1000,
  width = 1000,
  server = "",
  pair = "",
  pad = 1e+05,
  outdir = "./"
)

Arguments

fusions.fname	(character)
complex.fname	(character)
cvgt.fname	(character)
gngt.fname	(character)
agt.fname	(character)
cgc.fname	(character)
ev.types	(character)
height	(numeric)
width	(numeric)
server	(character)
pair	(character)
pad	(numeric)
outdir	(character)

Value

data.table

mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.