deconstructsigs_histogram: deconstructsigs_histogram

In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes

deconstructsigs_histogram

Description

TODO

create histogram plot for deconstructSigs

Usage

deconstructsigs_histogram(
  sigs.fn = NULL,
  sigs.cohort.fn = NULL,
  id = "",
  cohort.type = "",
  outdir = "~",
  sigMet = NULL,
  ...
)

Arguments

sigs.fn	(character) deconstructSigs results path
sigs.cohort.fn	(character) path to cohort
cohort.type	(character) e.g. supplied, Cell, tumor type ( actually optional )
sigMet	(data.table) data table with description of mutaitonal signatures (sig.metadata.txt in the casereport data folder)
...	additional params passed ppng
pair	(character)

Value

histogram which you can then ppng etc.

mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.