makeSummaryTable: makeSummaryTable

In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes

makeSummaryTable

Description

Function for generating a summary table of interesting driver genes for casereport.

Usage

makeSummaryTable(
  cnv_table,
  fusions_table,
  expression_table,
  mutations_table,
  onco_table
)

Arguments

cnv_table	file path to casereport copy number variants table
fusions_table	file path to casereport fusions table
expression_table	file path to casereport over/under expression table
mutations_table	file path to casereport driver mutations table
onco_table	file path to casereport oncotable
the	directory of casereport

Value

summary table of driver genes.

mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.