annotate_with_pmkb: annotate_with_pmkb
In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes
annotate_with_pmkb R Documentation
annotate_with_pmkb
Description
annotate driver mutations with tier and gene.type information from the PMKB table
Usage
annotate_with_pmkb(driver.mutations.dt, pmkb_tsv = NA)
Arguments
driver.mutations.dt
(data.table) must contain column "gene"
pmkb_tsv
(character) path to PMKB TSV (if not provided then the default table supplied with the package will be used
mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.
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| annotate_with_pmkb | R Documentation |
annotate_with_pmkb
Description
annotate driver mutations with tier and gene.type information from the PMKB table
Usage
annotate_with_pmkb(driver.mutations.dt, pmkb_tsv = NA)
Arguments
driver.mutations.dt |
(data.table) must contain column "gene" |
pmkb_tsv |
(character) path to PMKB TSV (if not provided then the default table supplied with the package will be used |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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