grab.hets: grab.hets
In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes
grab.hets R Documentation
grab.hets
Description
returns allele gtrack given sites.txt from het pileup
Usage
grab.hets(agt.fname = NULL, min.frac = 0.2, max.frac = 0.8)
Arguments
agt.fname
(character) path to sites.txt
min.frac
(numeric) between 0 and 1, min frequency in normal to count as het site
max.frac
(numeric) between 0 and 1, max frequency in normal to count as het site
Value
allele gTrack
mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.
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| grab.hets | R Documentation |
grab.hets
Description
returns allele gtrack given sites.txt from het pileup
Usage
grab.hets(agt.fname = NULL, min.frac = 0.2, max.frac = 0.8)
Arguments
agt.fname |
(character) path to sites.txt |
min.frac |
(numeric) between 0 and 1, min frequency in normal to count as het site |
max.frac |
(numeric) between 0 and 1, max frequency in normal to count as het site |
Value
allele gTrack
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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