get_oncokb_annotations: get_oncokb_annotations

In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes

get_oncokb_annotations

Description

Get a data.table containing specific fields from a list of OncoKB responses

Usage

get_oncokb_annotations(
  oncokb.response,
  fields = c("highestSensitiveLevel", "highestResistanceLevel",
    "highestDiagnosticImplicationLevel", "highestPrognosticImplicationLevel")
)

Arguments

oncokb.response	either a single response object or a list of response objects
fields	the fields to extract from the OncoKB response

Value

data.table with the values of the fields in each response

Author(s)

Alon Shaiber

mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.