covcbs: covcbs
In mskilab/casereport: casereport: Whole-genome + transcription based report for cancer genomes
covcbs R Documentation
covcbs
Description
covcbs
Usage
covcbs(
x,
field = "ratio",
name = "sample",
max.ranges = 10000,
lwd.border = 0.2,
purity = NULL,
ploidy = NULL,
rebin = NULL,
strip.chr = FALSE,
...
)
Arguments
x
(character) path to coverage GRanges
field
(character) field containing t/n ratio
name
(character) name of gTrack
max.ranges
(numeric) maximum ranges to plot, default 1e4
lwd.border
(numeric) lwd of circles in gTrack, default 0.2
purity
(numeric) sample purity estimate
ploidy
(numeric) sample ploidy estimate
rebin
(numeric) bin size (bp) if rebinning coverage
strip.chr
(logical) strip chromosome prefix of coverage file
mskilab/casereport documentation built on Oct. 19, 2022, 3 a.m.
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| covcbs | R Documentation |
covcbs
Description
covcbs
Usage
covcbs( x, field = "ratio", name = "sample", max.ranges = 10000, lwd.border = 0.2, purity = NULL, ploidy = NULL, rebin = NULL, strip.chr = FALSE, ... )
Arguments
x |
(character) path to coverage GRanges |
field |
(character) field containing t/n ratio |
name |
(character) name of gTrack |
max.ranges |
(numeric) maximum ranges to plot, default 1e4 |
lwd.border |
(numeric) lwd of circles in gTrack, default 0.2 |
purity |
(numeric) sample purity estimate |
ploidy |
(numeric) sample ploidy estimate |
rebin |
(numeric) bin size (bp) if rebinning coverage |
strip.chr |
(logical) strip chromosome prefix of coverage file |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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