Files in mskilab/gUtils
R Package Providing Additional Capabilities and Speed for GenomicRanges Operations
.Rbuildignore
.gitattributes
.github/workflows/check-release.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/gUtils.R
README.md
cran-comments.md
data-raw/prep_UCSC.R
data/grdata.rda
gUtils-manual.pdf
gUtils.Rproj
inst/extdata/dranger.txt
inst/extdata/gencode.v19.annotation.gtf.gr.rds
inst/extdata/hg19.broad.chrom.sizes
inst/extdata/hg19.chrom.sizes
inst/extdata/hg19.regularChr.chrom.sizes
inst/extdata/hg38.chrom.sizes
inst/extdata/human_g1k_v37.chrom.sizes
inst/extdata/human_g1k_v37.no.extra.chrom.sizes
inst/extdata/human_g1k_v37_decoy.chrom.sizes
inst/extdata/ind.rds
inst/extdata/refGene.hg19.gr.rds
inst/extdata/refGene.hg19.grl.rds
man/anchorlift.Rd
man/dt2gr.Rd
man/example_dnase.Rd
man/example_genes.Rd
man/gr.breaks.Rd
man/gr.chr.Rd
man/gr.collapse.Rd
man/gr.dice.Rd
man/gr.disjoin.Rd
man/gr.dist.Rd
man/gr.duplicated.Rd
man/gr.end.Rd
man/gr.findoverlaps.Rd
man/gr.fix.Rd
man/gr.flatten.Rd
man/gr.flipstrand.Rd
man/gr.in-shortcut.Rd
man/gr.in-strand-shortcut.Rd
man/gr.in.Rd
man/gr.match.Rd
man/gr.merge.Rd
man/gr.mid.Rd
man/gr.nochr.Rd
man/gr.nudge-shortcut.Rd
man/gr.nudge.Rd
man/gr.pairflip.Rd
man/gr.quantile.Rd
man/gr.query.Rd
man/gr.rand.Rd
man/gr.reduce.Rd
man/gr.sample.Rd
man/gr.setdiff.Rd
man/gr.simplify.Rd
man/gr.start.Rd
man/gr.string.Rd
man/gr.stripstrand.Rd
man/gr.sub.Rd
man/gr.sum.Rd
man/gr.tile.Rd
man/gr.tile.map.Rd
man/gr.trim.Rd
man/gr.val-O.Rd
man/gr.val-fractional.Rd
man/gr.val-mean.Rd
man/gr.val-numbers.Rd
man/gr.val-shortcut.Rd
man/gr.val-strand.Rd
man/gr.val-total.Rd
man/gr.val.Rd
man/gr2dt.Rd
man/grbind.Rd
man/grfo-shortcut.Rd
man/grfo.Rd
man/grl.bind.Rd
man/grl.end.Rd
man/grl.eval.Rd
man/grl.expand.Rd
man/grl.hiC.Rd
man/grl.in-shortcut.Rd
man/grl.in.Rd
man/grl.pivot.Rd
man/grl.query.Rd
man/grl.reduce.Rd
man/grl.shrink.Rd
man/grl.start.Rd
man/grl.string.Rd
man/grl.unlist.Rd
man/grl1.Rd
man/grl2.Rd
man/hg_seqlengths.Rd
man/parse.gr.Rd
man/parse.grl.Rd
man/ra.duplicated.Rd
man/ra.overlaps.Rd
man/rebin.Rd
man/rle.query.Rd
man/rrbind.Rd
man/seg2gr.Rd
man/si.Rd
man/si2gr.Rd
man/standardize_segs.Rd
man/streduce.Rd
notebooks/Demo1.ipynb
notebooks/Demo2.ipynb
notebooks/Demo3.ipynb
old.travis.yml
rtdocs/Makefile
rtdocs/conf.py
rtdocs/data.rst
rtdocs/figs.R
rtdocs/figures/COSMICplot.png
rtdocs/figures/flank.pdf
rtdocs/figures/flank.png
rtdocs/figures/flank_start.png
rtdocs/figures/gr.end.pdf
rtdocs/figures/gr.end.png
rtdocs/figures/gr.end_wstrand.png
rtdocs/figures/gr.flatten.png
rtdocs/figures/gr.flipstrand.png
rtdocs/figures/gr.mid.pdf
rtdocs/figures/gr.mid.png
rtdocs/figures/gr.rand.pdf
rtdocs/figures/gr.rand.png
rtdocs/figures/gr.refactor.pdf
rtdocs/figures/gr.refactor.png
rtdocs/figures/gr.sample.pdf
rtdocs/figures/gr.sample.png
rtdocs/figures/gr.simplify.pdf
rtdocs/figures/gr.simplify.png
rtdocs/figures/gr.start.pdf
rtdocs/figures/gr.start.png
rtdocs/figures/gr.start_wstrand.png
rtdocs/figures/gr.tile.pdf
rtdocs/figures/gr.tile.png
rtdocs/figures/shift.pdf
rtdocs/figures/shift.png
rtdocs/figures/streduce.pdf
rtdocs/figures/streduce.png
rtdocs/functions/functions.Rrst
rtdocs/functions/functions.rst
rtdocs/index.rst
rtdocs/introduction.rst
rtdocs/make.bat
rtdocs/rangeops.rst
rtdocs/rsam.rst
rtdocs/tutorial.rst
rtdocs/utils.rst
tests/testthat.R
tests/testthat/human_g1k_v37.no.extra.chrom.sizes
tests/testthat/test_rangeops.R
