Files in muschellij2/fslr
Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.lintr
.travis.yml
Archive.zip
CRAN-RELEASE
CRAN-SUBMISSION
DESCRIPTION
NAMESPACE
NEWS.md
R/applytopup.R
R/applywarp.R
R/aux_file.R
R/avscale.R
R/bitpix.R
R/cal_max.R
R/cal_min.R
R/convert_xfm.R
R/data_type.R
R/datatype.R
R/descrip.R
R/dim_.R
R/download_fsl.R
R/dtifit.R
R/eddy.R
R/eddy_correct.R
R/enforce_form.R
R/epi_reg.R
R/face_removal_mask.R
R/fast.R
R/flirt_apply.R
R/fnirt.R
R/fsl_abs.R
R/fsl_acos.R
R/fsl_add.R
R/fsl_anat.R
R/fsl_asin.R
R/fsl_atan.R
R/fsl_bet.R
R/fsl_bin.R
R/fsl_bin_tab.R
R/fsl_binv.R
R/fsl_cluster.R
R/fsl_cos.R
R/fsl_data_dir.R
R/fsl_deface.R
R/fsl_dice.R
R/fsl_dilate.R
R/fsl_div.R
R/fsl_edge.R
R/fsl_erode.R
R/fsl_exp.R
R/fsl_fill.R
R/fsl_index.R
R/fsl_log.R
R/fsl_mask.R
R/fsl_maths.R
R/fsl_merge.R
R/fsl_mul.R
R/fsl_nan.R
R/fsl_nanm.R
R/fsl_rand.R
R/fsl_randn.R
R/fsl_read_xfm.R
R/fsl_recip.R
R/fsl_rem.R
R/fsl_resample.R
R/fsl_slicetimer.R
R/fsl_smooth.R
R/fsl_smoothest.R
R/fsl_sqr.R
R/fsl_sqrt.R
R/fsl_sub.R
R/fsl_sub2.R
R/fsl_swapdim.R
R/fsl_tan.R
R/fsl_thresh.R
R/fsl_tsplot.R
R/fsl_version.R
R/fslabs.R
R/fslabs.help.R
R/fslacos.R
R/fslacos.help.R
R/fsladd.R
R/fsladd.help.R
R/fsland.R
R/fslasin.R
R/fslasin.help.R
R/fslatan.R
R/fslatan.help.R
R/fslbin.R
R/fslbin.help.R
R/fslbinv.R
R/fslbinv.help.R
R/fslchfiletype.R
R/fslcos.R
R/fslcos.help.R
R/fslcpgeom.R
R/fsldilate.R
R/fsldiv.R
R/fsldiv.help.R
R/fsledge.R
R/fsledge.help.R
R/fslentropy.R
R/fslerode.help.R
R/fslexp.R
R/fslexp.help.R
R/fslfill.help.R
R/fslfill2.R
R/fslgetorient.R
R/fslhd.R
R/fslindex.R
R/fslindex.help.R
R/fsllog.R
R/fsllog.help.R
R/fslmask.help.R
R/fslmean.R
R/fslmin_max.R
R/fslmul.R
R/fslmul.help.R
R/fslnan.R
R/fslnan.help.R
R/fslnanm.R
R/fslnanm.help.R
R/fslor.R
R/fslrand.R
R/fslrand.help.R
R/fslrandn.R
R/fslrandn.help.R
R/fslrecip.R
R/fslrecip.help.R
R/fslrem.R
R/fslrem.help.R
R/fslrobustfov.R
R/fslroi.R
R/fslsd.R
R/fslsin.R
R/fslsin.help.R
R/fslsmooth.help.R
R/fslsmooth_in_mask.R
R/fslsplit.R
R/fslsqr.R
R/fslsqr.help.R
R/fslsqrt.R
R/fslsqrt.help.R
R/fslsub.R
R/fslsub.help.R
R/fslsub2.help.R
R/fslsum.R
R/fsltan.R
R/fsltan.help.R
R/fslthresh.help.R
R/fslview.R
R/fslvol.R
R/fslvolume.R
R/fslxor.R
R/import_methods.R
R/intent_code.R
R/intent_name.R
R/intent_p1.R
R/intent_p2.R
R/intent_p3.R
R/magic.R
R/mcflirt.R
R/mid_sagittal_align.R
R/mni_fname.R
R/mridefacer.R
R/pixdim.R
R/probtrackx.R
R/probtrackx2.R
R/qform.R
R/qform_code.R
R/readrpi.R
R/rpi_orient.R
R/run_first_all.R
R/scl_inter.R
R/scl_slope.R
R/sform.R
R/sform_code.R
R/sizeof_hdr.R
R/slice_code.R
R/slice_duration.R
R/slice_end.R
R/slice_start.R
R/susan.R
R/toffset.R
R/topup.R
R/vox_offset.R
R/xfibres.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
appveyor.yml
cran-comments.md
data-raw/DATASET.R
data-raw/create_face_mask.R
docs/articles/dti_data.html
docs/articles/dti_data_files/figure-html/unnamed-chunk-4-1.png
docs/articles/dti_data_files/figure-html/unnamed-chunk-5-1.png
docs/articles/dti_data_files/figure-html/unnamed-chunk-6-1.png
docs/articles/dti_data_files/figure-html/unnamed-chunk-7-1.png
docs/articles/fslr.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/applytopup.html
docs/reference/aux_file-methods.html
docs/reference/bitpix-methods.html
docs/reference/cal_max-methods.html
docs/reference/cal_min-methods.html
docs/reference/check_file.html
docs/reference/checkout.html
docs/reference/data_type-methods.html
docs/reference/datatype-methods.html
docs/reference/descrip-methods.html
docs/reference/dim_-methods.html
docs/reference/download_fsl.html
docs/reference/dtifit.html
docs/reference/eddy.html
docs/reference/eddy_correct.html
docs/reference/enforce_form.html
docs/reference/face_removal_mask.html
docs/reference/fast.help.html
docs/reference/fast.html
docs/reference/flirt.help.html
docs/reference/flirt.html
docs/reference/flirt_apply.html
docs/reference/fnirt.help.html
docs/reference/fnirt.html
docs/reference/fnirt_with_affine.html
docs/reference/fnirt_with_affine_apply.html
docs/reference/fsl_anat.help.html
docs/reference/fsl_anat.html
docs/reference/fsl_applywarp.help.html
docs/reference/fsl_applywarp.html
docs/reference/fsl_atlas_dir.html
docs/reference/fsl_avscale.html
docs/reference/fsl_biascorrect.html
docs/reference/fsl_bin_tab.html
docs/reference/fsl_cluster.html
docs/reference/fsl_data_dir.html
docs/reference/fsl_dice.html
docs/reference/fsl_resample.html
docs/reference/fsl_smoothest.html
docs/reference/fsl_std_dir.html
docs/reference/fsl_version.html
docs/reference/fslabs.help.html
docs/reference/fslabs.html
docs/reference/fslacos.help.html
docs/reference/fslacos.html
docs/reference/fsladd.help.html
docs/reference/fsladd.html
docs/reference/fsland.html
docs/reference/fslasin.help.html
docs/reference/fslasin.html
docs/reference/fslatan.help.html
docs/reference/fslatan.html
docs/reference/fslbet.help.html
docs/reference/fslbet.html
docs/reference/fslbin.help.html
docs/reference/fslbin.html
docs/reference/fslbinv.help.html
docs/reference/fslbinv.html
docs/reference/fslchfiletype.help.html
docs/reference/fslchfiletype.html
docs/reference/fslcmd.html
docs/reference/fslcog.html
docs/reference/fslcos.help.html
docs/reference/fslcos.html
docs/reference/fslcpgeom.help.html
docs/reference/fslcpgeom.html
docs/reference/fsldilate.html
docs/reference/fsldir.html
docs/reference/fsldiv.help.html
docs/reference/fsldiv.html
docs/reference/fsledge.help.html
docs/reference/fsledge.html
docs/reference/fslentropy.html
docs/reference/fslepi_reg.html
docs/reference/fslerode.help.html
docs/reference/fslerode.html
docs/reference/fslexp.help.html
docs/reference/fslexp.html
docs/reference/fslfill.help.html
docs/reference/fslfill.html
docs/reference/fslfill2.html
docs/reference/fslhd.help.html
docs/reference/fslhd.html
docs/reference/fslhd.parse.html
docs/reference/fslhelp.html
docs/reference/fslindex.help.html
docs/reference/fslindex.html
docs/reference/fsllog.help.html
docs/reference/fsllog.html
docs/reference/fslmask.help.html
docs/reference/fslmask.html
docs/reference/fslmaths.help.html
docs/reference/fslmaths.html
docs/reference/fslmean.html
docs/reference/fslmerge.help.html
docs/reference/fslmerge.html
docs/reference/fslmin_max.html
docs/reference/fslmul.help.html
docs/reference/fslmul.html
docs/reference/fslnan.help.html
docs/reference/fslnan.html
docs/reference/fslnanm.help.html
docs/reference/fslnanm.html
docs/reference/fslor.html
docs/reference/fslorient.help.html
docs/reference/fslorient.html
docs/reference/fslorient_wrap.html
docs/reference/fslorienter.html
docs/reference/fslrand.help.html
docs/reference/fslrand.html
docs/reference/fslrandn.help.html
docs/reference/fslrandn.html
docs/reference/fslrange.html
docs/reference/fslrecip.help.html
docs/reference/fslrecip.html
docs/reference/fslrem.help.html
docs/reference/fslrem.html
docs/reference/fslreorient2std.help.html
docs/reference/fslreorient2std.html
docs/reference/fslrobustfov.help.html
docs/reference/fslrobustfov.html
docs/reference/fslroi.html
docs/reference/fslsd.html
docs/reference/fslsin.help.html
docs/reference/fslsin.html
docs/reference/fslslicetimer.html
docs/reference/fslsmooth.help.html
docs/reference/fslsmooth.html
docs/reference/fslsmooth_in_mask.html
docs/reference/fslsplit.help.html
docs/reference/fslsplit.html
docs/reference/fslsqr.help.html
docs/reference/fslsqr.html
docs/reference/fslsqrt.help.html
docs/reference/fslsqrt.html
docs/reference/fslstats.help.html
docs/reference/fslstats.html
docs/reference/fslsub.help.html
docs/reference/fslsub.html
docs/reference/fslsub2.help.html
docs/reference/fslsub2.html
docs/reference/fslsum.html
docs/reference/fslswapdim.help.html
docs/reference/fslswapdim.html
docs/reference/fsltan.help.html
docs/reference/fsltan.html
docs/reference/fslthresh.help.html
docs/reference/fslthresh.html
docs/reference/fslval.help.html
docs/reference/fslval.html
docs/reference/fslview.help.html
docs/reference/fslview.html
docs/reference/fslvol.html
docs/reference/fslvolume.html
docs/reference/fslxor.html
docs/reference/get.fsl.html
docs/reference/get.fsloutput.html
docs/reference/get.imgext.html
docs/reference/getForms.html
docs/reference/get_quickshear_mask.html
docs/reference/have.fsl.html
docs/reference/index.html
docs/reference/intent_code-methods.html
docs/reference/intent_name-methods.html
docs/reference/intent_p1-methods.html
docs/reference/intent_p2-methods.html
docs/reference/intent_p3-methods.html
docs/reference/invert_xfm.html
docs/reference/magic-methods.html
docs/reference/mcflirt.help.html
docs/reference/mcflirt.html
docs/reference/melodic.help.html
docs/reference/melodic.html
docs/reference/mid_sagittal_align.html
docs/reference/mni_fname.html
docs/reference/mni_img.html
docs/reference/mridefacer.html
docs/reference/orientation-methods.html
docs/reference/parse_avscale.html
docs/reference/pixdim-methods.html
docs/reference/probtrackx.html
docs/reference/qform_code-methods.html
docs/reference/read_xfm.html
docs/reference/readrpi.html
docs/reference/reverse_rpi_orient.html
docs/reference/rpi_orient.html
docs/reference/run_first_all.help.html
docs/reference/run_first_all.html
docs/reference/scl_inter-methods.html
docs/reference/scl_slope-methods.html
docs/reference/sform_code-methods.html
docs/reference/sizeof_hdr-methods.html
docs/reference/slice_code-methods.html
docs/reference/slice_duration-methods.html
docs/reference/slice_end-methods.html
docs/reference/slice_start-methods.html
docs/reference/susan.help.html
docs/reference/susan.html
docs/reference/toffset-methods.html
docs/reference/topup.html
docs/reference/vox_offset-methods.html
docs/reference/xfibres.html
fslr.Rproj
fslr_Generic_Function.R
fslr_Generic_Maker.R
fslr_Generic_fslmaths.R
fslr_Generic_fslmaths_Maker.R
fslr_Generic_fslmaths_onefile.R
fslr_Generic_fslstats.R
fslr_Generic_fslstats_Maker.R
fslr_Generic_fslstats_nonzero.R
fslr_maths_helpfile.R
fslr_underscore_functions.R
fslr_underscore_functions_maker.R
icon.png
inst/CITATION
inst/extdata/MNI152_T1_0.5mm_facemask.nii.gz
inst/extdata/MNI152_T1_1mm_facemask.nii.gz
inst/extdata/MNI152_T1_2mm_facemask.nii.gz
inst/extdata/example_dwi.zip
man/applytopup.Rd
man/aux_file-methods.Rd
man/bitpix-methods.Rd
man/cal_max-methods.Rd
man/cal_min-methods.Rd
man/check_file.Rd
man/checkout.Rd
man/data_type-methods.Rd
man/datatype-methods.Rd
man/descrip-methods.Rd
man/dim_-methods.Rd
man/download_fsl.Rd
man/dtifit.Rd
man/eddy.Rd
man/eddy_correct.Rd
man/enforce_form.Rd
man/face_removal_mask.Rd
man/fast.Rd
man/fast.help.Rd
man/figures/sticker.png
man/flirt.Rd
man/flirt.help.Rd
man/flirt_apply.Rd
man/fnirt.Rd
man/fnirt.help.Rd
man/fnirt_with_affine.Rd
man/fnirt_with_affine_apply.Rd
man/fsl_anat.Rd
man/fsl_anat.help.Rd
man/fsl_applywarp.Rd
man/fsl_applywarp.help.Rd
man/fsl_atlas_dir.Rd
man/fsl_avscale.Rd
man/fsl_biascorrect.Rd
man/fsl_bin_tab.Rd
man/fsl_cluster.Rd
man/fsl_data_dir.Rd
man/fsl_deface.Rd
man/fsl_dice.Rd
man/fsl_resample.Rd
man/fsl_smoothest.Rd
man/fsl_std_dir.Rd
man/fsl_tsplot.Rd
man/fsl_version.Rd
man/fslabs.Rd
man/fslabs.help.Rd
man/fslacos.Rd
man/fslacos.help.Rd
man/fsladd.Rd
man/fsladd.help.Rd
man/fsland.Rd
man/fslasin.Rd
man/fslasin.help.Rd
man/fslatan.Rd
man/fslatan.help.Rd
man/fslbet.Rd
man/fslbet.help.Rd
man/fslbin.Rd
man/fslbin.help.Rd
man/fslbinv.Rd
man/fslbinv.help.Rd
man/fslchfiletype.Rd
man/fslchfiletype.help.Rd
man/fslcmd.Rd
man/fslcog.Rd
man/fslcos.Rd
man/fslcos.help.Rd
man/fslcpgeom.Rd
man/fslcpgeom.help.Rd
man/fsldilate.Rd
man/fsldir.Rd
man/fsldiv.Rd
man/fsldiv.help.Rd
man/fsledge.Rd
man/fsledge.help.Rd
man/fslentropy.Rd
man/fslepi_reg.Rd
man/fslerode.Rd
man/fslerode.help.Rd
man/fslexp.Rd
man/fslexp.help.Rd
man/fslfill.Rd
man/fslfill.help.Rd
man/fslfill2.Rd
man/fslhd.Rd
man/fslhd.help.Rd
man/fslhd.parse.Rd
man/fslhelp.Rd
man/fslindex.Rd
man/fslindex.help.Rd
man/fsllog.Rd
man/fsllog.help.Rd
man/fslmask.Rd
man/fslmask.help.Rd
man/fslmaths.Rd
man/fslmaths.help.Rd
man/fslmean.Rd
man/fslmerge.Rd
man/fslmerge.help.Rd
man/fslmin_max.Rd
man/fslmul.Rd
man/fslmul.help.Rd
man/fslnan.Rd
man/fslnan.help.Rd
man/fslnanm.Rd
man/fslnanm.help.Rd
man/fslor.Rd
man/fslorient.Rd
man/fslorient.help.Rd
man/fslorient_wrap.Rd
man/fslorienter.Rd
man/fslrand.Rd
man/fslrand.help.Rd
man/fslrandn.Rd
man/fslrandn.help.Rd
man/fslrange.Rd
man/fslrecip.Rd
man/fslrecip.help.Rd
man/fslrem.Rd
man/fslrem.help.Rd
man/fslreorient2std.Rd
man/fslreorient2std.help.Rd
man/fslrobustfov.Rd
man/fslrobustfov.help.Rd
man/fslroi.Rd
man/fslsd.Rd
man/fslsin.Rd
man/fslsin.help.Rd
man/fslslicetimer.Rd
man/fslsmooth.Rd
man/fslsmooth.help.Rd
man/fslsmooth_in_mask.Rd
man/fslsplit.Rd
man/fslsplit.help.Rd
man/fslsqr.Rd
man/fslsqr.help.Rd
man/fslsqrt.Rd
man/fslsqrt.help.Rd
man/fslstats.Rd
man/fslstats.help.Rd
man/fslsub.Rd
man/fslsub.help.Rd
man/fslsub2.Rd
man/fslsub2.help.Rd
man/fslsum.Rd
man/fslswapdim.Rd
man/fslswapdim.help.Rd
man/fsltan.Rd
man/fsltan.help.Rd
man/fslthresh.Rd
man/fslthresh.help.Rd
man/fslval.Rd
man/fslval.help.Rd
man/fslview.Rd
man/fslview.help.Rd
man/fslvol.Rd
man/fslvolume.Rd
man/fslxor.Rd
man/get.fsl.Rd
man/get.fsloutput.Rd
man/get.imgext.Rd
man/getForms.Rd
man/get_quickshear_mask.Rd
man/have.fsl.Rd
man/intent_code-methods.Rd
man/intent_name-methods.Rd
man/intent_p1-methods.Rd
man/intent_p2-methods.Rd
man/intent_p3-methods.Rd
man/invert_xfm.Rd
man/magic-methods.Rd
man/mcflirt.Rd
man/mcflirt.help.Rd
man/melodic.Rd
man/melodic.help.Rd
man/mid_sagittal_align.Rd
man/mni_fname.Rd
man/mni_img.Rd
man/mridefacer.Rd
man/orientation-methods.Rd
man/parse_avscale.Rd
man/pixdim-methods.Rd
man/probtrackx.Rd
man/qform_code-methods.Rd
man/read_xfm.Rd
man/readrpi.Rd
man/reverse_rpi_orient.Rd
man/rpi_orient.Rd
man/run_first_all.Rd
man/run_first_all.help.Rd
man/scl_inter-methods.Rd
man/scl_slope-methods.Rd
man/sform_code-methods.Rd
man/sizeof_hdr-methods.Rd
man/slice_code-methods.Rd
man/slice_duration-methods.Rd
man/slice_end-methods.Rd
man/slice_start-methods.Rd
man/susan.Rd
man/susan.help.Rd
man/toffset-methods.Rd
man/topup.Rd
man/vox_offset-methods.Rd
man/xfibres.Rd
sticker.R
vignettes/dti_data.Rmd
vignettes/fslr.Rmd
