Protein Sequences

.Rbuildignore

.gitignore

.gitignore~

BEND3RER.nwk

DESCRIPTION

Downloading

LICENSE

NAMESPACE

NoncodingRegionWorkflow

R/PermulationFuncs.R R/RERfuncs.R R/RcppExports.R R/asr_diagnostics.R R/coordsfn.R R/enrichmentFuncs.R R/estimateTreeFuncs.R R/plottingFuncs.R R/projection_coevo.R README.md RERconverge-master.pdf

RERconverge.Rproj

Rplots.pdf

data/RERresults.RData

data/basalRate.RData

data/logAdultWeightcm.RData

data/mamRERw.RData

data/mamTreesSub.RData

data/marineBinary.RData

data/marineTreesSub.RData

data/sleepPattern.RData

data/toyTrees.RData

ext/ExampleAlignments/APOE.fasta

ext/ExampleAlignments/EGFR.fasta

ext/ExampleAlignments/TNF.fasta

ext/ExampleAlignments/TP53.fasta

ext/ExampleAlignments/VEGFA.fasta

ext/MammalToyTrees.txt

ext/MarineGeneTrees.tre

ext/MarineTreeBin.txt

ext/MarineTreeBinCommonNames.txt

ext/MarineTreeBinCommonNames_noCGM.txt

ext/OriginalUpdatedRERsMoleAccelerationPrecisionRecall.rds

ext/eyespecificgenes.master.list

ext/mammal62aa_meredplus_wCM.trees

ext/mammal_62_aa_sub.tre

ext/mastertree.tree

ext/speciesCommonAbbr.name

ext/subsetMammalGeneTrees.txt

gmtfile.gmt

inst/extdata/ExampleAlignments/APOE.fasta

inst/extdata/ExampleAlignments/EGFR.fasta

inst/extdata/ExampleAlignments/TNF.fasta

inst/extdata/ExampleAlignments/TP53.fasta

inst/extdata/ExampleAlignments/VEGFA.fasta

inst/extdata/MammalToyTrees.txt

inst/extdata/MarineTreeBin.txt

inst/extdata/MarineTreeBinCommonNames.txt

inst/extdata/MarineTreeBinCommonNames_noCGM.txt

inst/extdata/mammal_62_aa_sub.tre

inst/extdata/mastertree.tree

inst/extdata/subsetMammalGeneTrees.txt

mamRERw.rds

man/RERconverge.Rd man/Root.Rd man/adaptivePermulation.Rd man/asymmRerootingMethod.Rd man/boxPlotTest.Rd man/calculateCorPermuted.Rd man/calculatePermulatedPaths_apply.Rd man/char2Paths.Rd man/char2PathsCategorical.Rd man/char2TreeCategorical.Rd man/click_select_foreground_branches.Rd man/combinePermData.Rd man/compareRateModels.Rd man/correlateWithBinaryPhenotype.Rd man/correlateWithCategoricalPhenotype.Rd man/correlateWithContinuousPhenotype.Rd man/edgeVars.Rd man/estimatePhangornTree.Rd man/estimatePhangornTreeAll.Rd man/fastwilcoxGMTall.Rd man/filterByCriteria.Rd man/fixPseudoroot.Rd man/foreground2Paths.Rd man/foreground2Tree.Rd man/foreground2TreeClades.Rd man/generatePermulatedBinPhen.Rd man/generatePermulatedBinPhenSSMBatched.Rd man/getAllCor.Rd man/getAllCorExtantOnly.Rd man/getAllResiduals.Rd man/getAncLiks.Rd man/getBinaryPermulationInputsFromTree.Rd man/getEnrichPerms.Rd man/getForegroundInfoClades.Rd man/getLRnullDistribution.Rd man/getLikelihoodRatio.Rd man/getMatrixFromAbbr.Rd man/getPermsBinary.Rd man/getPermsBinaryExtantOnly.Rd man/getPermsBinaryFudged.Rd man/getPermsContinuous.Rd man/getPermsContinuousExtantOnly.Rd man/getStat.Rd man/getStatesAtNodes.Rd man/getStatesFromPhenTree.Rd man/kwdunn.test.Rd man/makeBinaryPaths.Rd man/matchAllNodesClades.Rd man/namePathsWSpecies.Rd man/permpvalcor.Rd man/permpvalenrich.Rd man/permutevec.Rd man/plotPositivesFromPermulations.Rd man/plotRers.Rd man/plotTreeCategorical.Rd man/plotTreeHighlightBranches.Rd man/pruneTree.Rd man/read.gmt.Rd man/readTrees.Rd man/returnRersAsNewickStrings.Rd man/returnRersAsTree.Rd man/returnRersAsTreesAll.Rd man/searchRateModels.Rd man/simBinPheno.Rd man/simBinPhenoCC.Rd man/simBinPhenoCCmidpoint.Rd man/simBinPhenoRank.Rd man/simBinPhenoSSM.Rd man/simBinPhenoVec.Rd man/simpermvec.Rd man/simulatevec.Rd man/translateNames.Rd man/tree2Paths.Rd man/tree2PathsClades.Rd man/treePlotNew.Rd man/treePlotRers.Rd man/visCompareTwoRateModels.Rd

src/Makevars

src/Makevars.win

src/RERconverge.dll

src/RcppExports.cpp

src/resid.cpp

tests/CheckTree2Paths.R tests/ConvertSpeciesNames.R

tests/PON1_addl_species.tre

tests/SpeciesNameConversionTable0818.csv

tests/SpeciesNames.RData

tests/benchmarkRERmethods.R tests/checkTreeMatch.R

tests/herbivoreTest.RData

tests/herbivoreTest.pdf tests/herbivoreTest_al_wt_an_te.pdf tests/herbivoreTest_allOptions.pdf tests/herbivoreTest_anctermOptions.pdf tests/runMarineSub-003.pdf tests/runMarineSub.R

tests/runMarineSub.Rnw

tests/runMarineSub.pdf tests/testBinaryPermulations.R

tests/toyRERs.nwk

tests/ucsc62mammals_commonnames.tre

tests/ucscTrees.RData

toyRERs.nwk

vignettes/ASR-walkthrough.Rmd vignettes/ASR-walkthrough.pdf

vignettes/ASR-walkthrough_cache/latex/__packages

vignettes/BEND3RER.nwk

vignettes/BioinformaticsRERconvergeSupp.Rmd

vignettes/BioinformaticsRERconvergeSupp.html

vignettes/BioinformaticsRERconvergeSupp.pdf vignettes/BioinformaticsRERconvergeSuppWithComment.pdf

vignettes/BioinformaticsRERconvergeSupp_cache/latex/__packages

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig10_3bdabf55b167fb7307b33a716a6a8979.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig10_3bdabf55b167fb7307b33a716a6a8979.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig10_3bdabf55b167fb7307b33a716a6a8979.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig1_ea6683d8ac2d693e4be6fbe85fa09fca.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig1_ea6683d8ac2d693e4be6fbe85fa09fca.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig1_ea6683d8ac2d693e4be6fbe85fa09fca.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2_e5d2d57a7993970c14045e210cb5f0a2.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2_e5d2d57a7993970c14045e210cb5f0a2.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2_e5d2d57a7993970c14045e210cb5f0a2.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2b_06516ca3dbbe784446b15b491c05f370.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2b_06516ca3dbbe784446b15b491c05f370.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2b_06516ca3dbbe784446b15b491c05f370.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2c_c2e30810f4fffe4739adf3bc86d8d674.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2c_c2e30810f4fffe4739adf3bc86d8d674.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig2c_c2e30810f4fffe4739adf3bc86d8d674.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig3_d2b6bbfc9b2ae9e8fd18efb99f346db0.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig3_d2b6bbfc9b2ae9e8fd18efb99f346db0.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig3_d2b6bbfc9b2ae9e8fd18efb99f346db0.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig4_eb68725e10838815d29ffa3441da7917.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig4_eb68725e10838815d29ffa3441da7917.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig4_eb68725e10838815d29ffa3441da7917.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig5_2230f45d1e0c67a6b34c0bd51a5ae636.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig5_2230f45d1e0c67a6b34c0bd51a5ae636.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig5_2230f45d1e0c67a6b34c0bd51a5ae636.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig6_b7bba4d52c83809428d2c2afd89565c4.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig6_b7bba4d52c83809428d2c2afd89565c4.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig6_b7bba4d52c83809428d2c2afd89565c4.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig7_b0105bd90076e048200cc2c2877818aa.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig7_b0105bd90076e048200cc2c2877818aa.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig7_b0105bd90076e048200cc2c2877818aa.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig8_64303403fa52358a48967d610be3828f.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig8_64303403fa52358a48967d610be3828f.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig8_64303403fa52358a48967d610be3828f.rdx

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig9_915cfad34d89afb9671c6241f469906f.RData

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig9_915cfad34d89afb9671c6241f469906f.rdb

vignettes/BioinformaticsRERconvergeSupp_cache/latex/fig9_915cfad34d89afb9671c6241f469906f.rdx

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig1-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig10-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig10-2.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig11-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig2-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig2b-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig2c-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig3-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig4-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig5-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig6-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig7-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig8-1.png

vignettes/BioinformaticsRERconvergeSupp_files/figure-html/fig9-1.png

vignettes/Categorical-Permulations-Walkthrough_cache/latex/__packages

vignettes/CategoricalWalkthrough2.Rmd vignettes/CategoricalWalkthrough2.pdf

vignettes/CategoricalWalkthrough2_cache/latex/__packages

vignettes/FullWalkthroughUTD.Rmd

vignettes/FullWalkthroughUTD.html

vignettes/FullWalkthroughUTD.pdf

vignettes/FullWalkthroughUTD_cache/html/__packages

vignettes/FullWalkthroughUTD_cache/html/fig10_4632a99febd87b40c064916b60027b28.RData

vignettes/FullWalkthroughUTD_cache/html/fig10_4632a99febd87b40c064916b60027b28.rdb

vignettes/FullWalkthroughUTD_cache/html/fig10_4632a99febd87b40c064916b60027b28.rdx

vignettes/FullWalkthroughUTD_cache/html/fig1_1f913c7fbc2321fbfac7e7d7a9427719.RData

vignettes/FullWalkthroughUTD_cache/html/fig1_1f913c7fbc2321fbfac7e7d7a9427719.rdb

vignettes/FullWalkthroughUTD_cache/html/fig1_1f913c7fbc2321fbfac7e7d7a9427719.rdx

vignettes/FullWalkthroughUTD_cache/html/fig2_e89f9861fb335f0411c8726a9d2268c1.RData

vignettes/FullWalkthroughUTD_cache/html/fig2_e89f9861fb335f0411c8726a9d2268c1.rdb

vignettes/FullWalkthroughUTD_cache/html/fig2_e89f9861fb335f0411c8726a9d2268c1.rdx

vignettes/FullWalkthroughUTD_cache/html/fig2b_c2869b5c93a56075107291a025866387.RData

vignettes/FullWalkthroughUTD_cache/html/fig2b_c2869b5c93a56075107291a025866387.rdb

vignettes/FullWalkthroughUTD_cache/html/fig2b_c2869b5c93a56075107291a025866387.rdx

vignettes/FullWalkthroughUTD_cache/html/fig2c_a2591f596cb40a2128f556dd91f26568.RData

vignettes/FullWalkthroughUTD_cache/html/fig2c_a2591f596cb40a2128f556dd91f26568.rdb

vignettes/FullWalkthroughUTD_cache/html/fig2c_a2591f596cb40a2128f556dd91f26568.rdx

vignettes/FullWalkthroughUTD_cache/html/fig2d_d7b44d3048791ce55679a58157355816.RData

vignettes/FullWalkthroughUTD_cache/html/fig2d_d7b44d3048791ce55679a58157355816.rdb

vignettes/FullWalkthroughUTD_cache/html/fig2d_d7b44d3048791ce55679a58157355816.rdx

vignettes/FullWalkthroughUTD_cache/html/fig3_28480f80f2fadcd95472d7cb1baaaca4.RData

vignettes/FullWalkthroughUTD_cache/html/fig3_28480f80f2fadcd95472d7cb1baaaca4.rdb

vignettes/FullWalkthroughUTD_cache/html/fig3_28480f80f2fadcd95472d7cb1baaaca4.rdx

vignettes/FullWalkthroughUTD_cache/html/fig4_f95d3db950717e2cbb7b2551371338f7.RData

vignettes/FullWalkthroughUTD_cache/html/fig4_f95d3db950717e2cbb7b2551371338f7.rdb

vignettes/FullWalkthroughUTD_cache/html/fig4_f95d3db950717e2cbb7b2551371338f7.rdx

vignettes/FullWalkthroughUTD_cache/html/fig5_508a9da4789c467d7317adaf8990f98d.RData

vignettes/FullWalkthroughUTD_cache/html/fig5_508a9da4789c467d7317adaf8990f98d.rdb

vignettes/FullWalkthroughUTD_cache/html/fig5_508a9da4789c467d7317adaf8990f98d.rdx

vignettes/FullWalkthroughUTD_cache/html/fig6_06655824edd4e631ea18aadd3c3ecf4a.RData

vignettes/FullWalkthroughUTD_cache/html/fig6_06655824edd4e631ea18aadd3c3ecf4a.rdb

vignettes/FullWalkthroughUTD_cache/html/fig6_06655824edd4e631ea18aadd3c3ecf4a.rdx

vignettes/FullWalkthroughUTD_cache/html/fig7_1734f3debc72ceb70d62909abb4aca8c.RData

vignettes/FullWalkthroughUTD_cache/html/fig7_1734f3debc72ceb70d62909abb4aca8c.rdb

vignettes/FullWalkthroughUTD_cache/html/fig7_1734f3debc72ceb70d62909abb4aca8c.rdx

vignettes/FullWalkthroughUTD_cache/html/fig8_92cb4f69a7f0c704c98326a07cf50502.RData

vignettes/FullWalkthroughUTD_cache/html/fig8_92cb4f69a7f0c704c98326a07cf50502.rdb

vignettes/FullWalkthroughUTD_cache/html/fig8_92cb4f69a7f0c704c98326a07cf50502.rdx

vignettes/FullWalkthroughUTD_cache/html/fig9_acf5e4a12f1d81017f6e2317b6484f89.RData

vignettes/FullWalkthroughUTD_cache/html/fig9_acf5e4a12f1d81017f6e2317b6484f89.rdb

vignettes/FullWalkthroughUTD_cache/html/fig9_acf5e4a12f1d81017f6e2317b6484f89.rdx

vignettes/FullWalkthroughUTD_cache/latex/__packages

vignettes/FullWalkthroughUTD_cache/latex/fig10_278a446ba84d1c4c1069eb81fca06ed6.RData

vignettes/FullWalkthroughUTD_cache/latex/fig10_278a446ba84d1c4c1069eb81fca06ed6.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig10_278a446ba84d1c4c1069eb81fca06ed6.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig1_26d68b195fb6343bd1b86af4784feb1b.RData

vignettes/FullWalkthroughUTD_cache/latex/fig1_26d68b195fb6343bd1b86af4784feb1b.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig1_26d68b195fb6343bd1b86af4784feb1b.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig2_b0d887a534096bd37a0161eecda4b330.RData

vignettes/FullWalkthroughUTD_cache/latex/fig2_b0d887a534096bd37a0161eecda4b330.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig2_b0d887a534096bd37a0161eecda4b330.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig2b_c2227bb839011c1600a0f9a8532d49bb.RData

vignettes/FullWalkthroughUTD_cache/latex/fig2b_c2227bb839011c1600a0f9a8532d49bb.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig2b_c2227bb839011c1600a0f9a8532d49bb.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig2c_35eb238c8f64761595cb00754d910d9d.RData

vignettes/FullWalkthroughUTD_cache/latex/fig2c_35eb238c8f64761595cb00754d910d9d.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig2c_35eb238c8f64761595cb00754d910d9d.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig2d_0dc9bf9f30dfc93b95de6aacf81279c2.RData

vignettes/FullWalkthroughUTD_cache/latex/fig2d_0dc9bf9f30dfc93b95de6aacf81279c2.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig2d_0dc9bf9f30dfc93b95de6aacf81279c2.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig3_fa1821f6274eaa78f13461e9f3a2300f.RData

vignettes/FullWalkthroughUTD_cache/latex/fig3_fa1821f6274eaa78f13461e9f3a2300f.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig3_fa1821f6274eaa78f13461e9f3a2300f.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig4_b12600d87897365822e7aeefa031bfe5.RData

vignettes/FullWalkthroughUTD_cache/latex/fig4_b12600d87897365822e7aeefa031bfe5.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig4_b12600d87897365822e7aeefa031bfe5.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig5_96038b8af4b3201766c7b01a5e718a74.RData

vignettes/FullWalkthroughUTD_cache/latex/fig5_96038b8af4b3201766c7b01a5e718a74.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig5_96038b8af4b3201766c7b01a5e718a74.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig6_801f4b1cba665dc3e0b2c69cc092d4cf.RData

vignettes/FullWalkthroughUTD_cache/latex/fig6_801f4b1cba665dc3e0b2c69cc092d4cf.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig6_801f4b1cba665dc3e0b2c69cc092d4cf.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig7_77fa82b3fe008563384b3b7315fbede9.RData

vignettes/FullWalkthroughUTD_cache/latex/fig7_77fa82b3fe008563384b3b7315fbede9.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig7_77fa82b3fe008563384b3b7315fbede9.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig8_d138dbbd0656f8b9af8be40823c45f2e.RData

vignettes/FullWalkthroughUTD_cache/latex/fig8_d138dbbd0656f8b9af8be40823c45f2e.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig8_d138dbbd0656f8b9af8be40823c45f2e.rdx

vignettes/FullWalkthroughUTD_cache/latex/fig9_fab48e4df83c0251d88c9d8d7423e319.RData

vignettes/FullWalkthroughUTD_cache/latex/fig9_fab48e4df83c0251d88c9d8d7423e319.rdb

vignettes/FullWalkthroughUTD_cache/latex/fig9_fab48e4df83c0251d88c9d8d7423e319.rdx

vignettes/FullWalkthroughUTD_files/MathJax.js.download

vignettes/FullWalkthroughUTD_files/figure-html/fig1-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig10-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig10-2.png

vignettes/FullWalkthroughUTD_files/figure-html/fig11-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig2-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig2b-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig2c-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig2d-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig3-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig4-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig5-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig6-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig7-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig8-1.png

vignettes/FullWalkthroughUTD_files/figure-html/fig9-1.png

vignettes/PhangornTreeBuildingWalkthrough.html

vignettes/PhangornTreeBuildingWalkthrough.pdf

vignettes/PhangornTreeBuildingWalkthrough_files/MathJax.js.download

vignettes/RERConverge.bib

vignettes/Rplots.pdf

vignettes/annotationformatsketch.png

vignettes/clicklogs/usr.click.r0.4902

vignettes/clicklogs/usr.click.r0.57228

vignettes/custom.css

vignettes/extant-only walkthrough.Rmd vignettes/extant-only-walkthrough.pdf

vignettes/gmtfile.gmt

vignettes/mamRERw.rds

vignettes/oldvignettefiles/CombinedIntro.Rmd

vignettes/oldvignettefiles/CombinedIntro.html

vignettes/oldvignettefiles/CombinedIntro_cache/html/__packages

vignettes/oldvignettefiles/CombinedIntro_cache/html/fig1_c6d4d88d84d642772ae5149a5e94c638.RData

vignettes/oldvignettefiles/CombinedIntro_cache/html/fig1_c6d4d88d84d642772ae5149a5e94c638.rdb

vignettes/oldvignettefiles/CombinedIntro_cache/html/fig1_c6d4d88d84d642772ae5149a5e94c638.rdx

vignettes/oldvignettefiles/ContinuousTraitAnalysis.Rmd

vignettes/oldvignettefiles/ContinuousTraitAnalysis.html

vignettes/oldvignettefiles/EnrichmentFuncsWalkthrough.Rmd

vignettes/oldvignettefiles/EnrichmentFuncsWalkthrough.html

vignettes/oldvignettefiles/EnrichmentFuncsWalkthrough.pdf

vignettes/oldvignettefiles/EnrichmentFuncsWalkthrough_cache/html/__packages

vignettes/oldvignettefiles/EnrichmentFuncsWalkthrough_cache/latex/__packages

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough.Rmd

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough.html

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough.pdf

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/__packages

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig10_b154255ba5268adee5fac88171e61872.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig10_b154255ba5268adee5fac88171e61872.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig10_b154255ba5268adee5fac88171e61872.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig1_85c3ff1ba5dae81c1458e963732fcc49.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig1_85c3ff1ba5dae81c1458e963732fcc49.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig1_85c3ff1ba5dae81c1458e963732fcc49.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig2_266b90ffe7a2cb6ef7c66dc2a5964512.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig2_266b90ffe7a2cb6ef7c66dc2a5964512.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig2_266b90ffe7a2cb6ef7c66dc2a5964512.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig3_620914e13b156dae45da6e0a83a82285.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig3_620914e13b156dae45da6e0a83a82285.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig3_620914e13b156dae45da6e0a83a82285.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig4_ec09fb2737cecf7174a8f8f241b835da.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig4_ec09fb2737cecf7174a8f8f241b835da.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig4_ec09fb2737cecf7174a8f8f241b835da.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig5_670e715d79fe99afc5a47a62561c0d58.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig5_670e715d79fe99afc5a47a62561c0d58.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig5_670e715d79fe99afc5a47a62561c0d58.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig6_720d349af1fd90bc97877b88584fecc5.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig6_720d349af1fd90bc97877b88584fecc5.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig6_720d349af1fd90bc97877b88584fecc5.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig7_fb80bdafcb6666995d3c0cefa07a131b.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig7_fb80bdafcb6666995d3c0cefa07a131b.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig7_fb80bdafcb6666995d3c0cefa07a131b.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig8_31beb10c764789f3914687797d255e4a.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig8_31beb10c764789f3914687797d255e4a.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig8_31beb10c764789f3914687797d255e4a.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig9_ea536c276623b98272ed8d8f08467d1b.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig9_ea536c276623b98272ed8d8f08467d1b.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/html/fig9_ea536c276623b98272ed8d8f08467d1b.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/__packages

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig10_134a25061de3d47a1057dd2162ff8552.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig10_134a25061de3d47a1057dd2162ff8552.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig10_134a25061de3d47a1057dd2162ff8552.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig1_478b8e91635b0a88a1f66358ac4c3738.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig1_478b8e91635b0a88a1f66358ac4c3738.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig1_478b8e91635b0a88a1f66358ac4c3738.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig2_4f4e20bd026cf350a001df9f385bd176.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig2_4f4e20bd026cf350a001df9f385bd176.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig2_4f4e20bd026cf350a001df9f385bd176.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig3_0b017193060a4a8a66593e0b3dad7db7.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig3_0b017193060a4a8a66593e0b3dad7db7.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig3_0b017193060a4a8a66593e0b3dad7db7.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig4_9a14309eee6a7949fb439204c246eb60.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig4_9a14309eee6a7949fb439204c246eb60.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig4_9a14309eee6a7949fb439204c246eb60.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig5_d208754c03e15f1e1e1f56597b0b734e.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig5_d208754c03e15f1e1e1f56597b0b734e.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig5_d208754c03e15f1e1e1f56597b0b734e.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig6_fe298502132478a52293fd344a42cadf.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig6_fe298502132478a52293fd344a42cadf.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig6_fe298502132478a52293fd344a42cadf.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig7_edec8f7ddfe13b8521edda8fa7b9f8a1.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig7_edec8f7ddfe13b8521edda8fa7b9f8a1.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig7_edec8f7ddfe13b8521edda8fa7b9f8a1.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig8_eb12bbfa691d75741aa8430fa91e9ad3.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig8_eb12bbfa691d75741aa8430fa91e9ad3.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig8_eb12bbfa691d75741aa8430fa91e9ad3.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig9_ba90383c4af813f4aeb79bcdff13b717.RData

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig9_ba90383c4af813f4aeb79bcdff13b717.rdb

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_cache/latex/fig9_ba90383c4af813f4aeb79bcdff13b717.rdx

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig1-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig1-2.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig10-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig10-2.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig11-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig2-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig3-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig4-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig5-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig6-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig7-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig8-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig9-1.png

vignettes/oldvignettefiles/RERconvergeAnalysisFullWalkthrough_files/figure-html/fig9-2.png

vignettes/oldvignettefiles/TestingKnit_cache/latex/__packages

vignettes/oldvignettefiles/TestingKnit_cache/latex/fig2c_61a0f0133c8b92248d1ac0544319396b.RData

vignettes/oldvignettefiles/TestingKnit_cache/latex/fig2c_61a0f0133c8b92248d1ac0544319396b.rdb

vignettes/oldvignettefiles/TestingKnit_cache/latex/fig2c_61a0f0133c8b92248d1ac0544319396b.rdx

vignettes/oldvignettefiles/TestingNewTreeFunctions.R vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn.Rmd

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn.html

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn.pdf

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/__packages

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig1_c60270466d2f0b04ab9509bb55d2cc68.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig1_c60270466d2f0b04ab9509bb55d2cc68.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig1_c60270466d2f0b04ab9509bb55d2cc68.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig2_e57feff9463c89ac81f5fe14e74be29c.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig2_e57feff9463c89ac81f5fe14e74be29c.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig2_e57feff9463c89ac81f5fe14e74be29c.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig3_207296945689db04119f75b2bdbe6bbc.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig3_207296945689db04119f75b2bdbe6bbc.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/fig3_207296945689db04119f75b2bdbe6bbc.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-10_e908f7b05a1cc5e664548c9f997331b6.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-10_e908f7b05a1cc5e664548c9f997331b6.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-10_e908f7b05a1cc5e664548c9f997331b6.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-1_088c9c977a366d3ab3168a742942ffb5.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-1_088c9c977a366d3ab3168a742942ffb5.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-1_088c9c977a366d3ab3168a742942ffb5.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-1_9d580ae714b6525e3213742d7475bfa4.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-1_9d580ae714b6525e3213742d7475bfa4.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-1_9d580ae714b6525e3213742d7475bfa4.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-5_bacdf7ea3575ae458fb0cfd7e191599d.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-5_bacdf7ea3575ae458fb0cfd7e191599d.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-5_bacdf7ea3575ae458fb0cfd7e191599d.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-7_6762dfcdbe6663718cc560075d1ea2f6.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-7_6762dfcdbe6663718cc560075d1ea2f6.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/html/unnamed-chunk-7_6762dfcdbe6663718cc560075d1ea2f6.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/__packages

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig1_65b06be934d595448c3cee0bc8a6fb76.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig1_65b06be934d595448c3cee0bc8a6fb76.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig1_65b06be934d595448c3cee0bc8a6fb76.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig2_2cce42578c71b6212fd9247475ea7506.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig2_2cce42578c71b6212fd9247475ea7506.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig2_2cce42578c71b6212fd9247475ea7506.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig3_e9f3f3feaffa28d5aec1ef328b2751b2.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig3_e9f3f3feaffa28d5aec1ef328b2751b2.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/fig3_e9f3f3feaffa28d5aec1ef328b2751b2.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-1_b8156a475181f4836f98cc9db764da9c.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-1_b8156a475181f4836f98cc9db764da9c.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-1_b8156a475181f4836f98cc9db764da9c.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-2_c99e6eebad48ea65c1e4a8814d34ee3f.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-2_c99e6eebad48ea65c1e4a8814d34ee3f.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-2_c99e6eebad48ea65c1e4a8814d34ee3f.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-3_24dc55d5ff124828b68858ff2ddc7ccc.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-3_24dc55d5ff124828b68858ff2ddc7ccc.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-3_24dc55d5ff124828b68858ff2ddc7ccc.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-4_75196650720cf8b9f447059967efef0d.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-4_75196650720cf8b9f447059967efef0d.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-4_75196650720cf8b9f447059967efef0d.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-5_cb1c6b4a13c9d2cf69486fcc3fd21feb.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-5_cb1c6b4a13c9d2cf69486fcc3fd21feb.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-5_cb1c6b4a13c9d2cf69486fcc3fd21feb.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-7_a50569c036eb662d754b82c4fe9552ab.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-7_a50569c036eb662d754b82c4fe9552ab.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-7_a50569c036eb662d754b82c4fe9552ab.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-8_8acc5a4572e044269dac3b100b9d3a17.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-8_8acc5a4572e044269dac3b100b9d3a17.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-8_8acc5a4572e044269dac3b100b9d3a17.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-9_2bb6d36d0aabf2e1406e34b0f50ecaad.RData

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-9_2bb6d36d0aabf2e1406e34b0f50ecaad.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_cache/latex/unnamed-chunk-9_2bb6d36d0aabf2e1406e34b0f50ecaad.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig1-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig1-2.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig2-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig3-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig3-2.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig4-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig4-2.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/fig5-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/unnamed-chunk-1-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/unnamed-chunk-2-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/unnamed-chunk-5-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/unnamed-chunk-6-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-html/unnamed-chunk-7-1.png

vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/fig1-1.pdf vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/fig1-2.pdf vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/fig2-1.pdf vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/fig3-1.pdf vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/fig3-2.pdf vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/fig4-1.pdf vignettes/oldvignettefiles/WalkThroughBinaryVignetteWynn_files/figure-latex/unnamed-chunk-2-1.pdf

vignettes/oldvignettefiles/WalkThroughBinaryVignette_cache/html/unnamed-chunk-3_a280e2361b86911a821da85044e61c16.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignette_cache/html/unnamed-chunk-3_a280e2361b86911a821da85044e61c16.rdx

vignettes/oldvignettefiles/WalkThroughBinaryVignette_cache/html/unnamed-chunk-4_436d0e414042e95d074d6e67b96655a5.rdb

vignettes/oldvignettefiles/WalkThroughBinaryVignette_cache/html/unnamed-chunk-4_436d0e414042e95d074d6e67b96655a5.rdx

vignettes/toyRERs.nwk

nclark-lab/RERconverge documentation built on June 9, 2025, 6:02 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

nclark-lab/RERconverge
Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

Files in nclark-lab/RERconverge
Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

R Package Documentation

Browse R Packages

We want your feedback!

nclark-lab/RERconverge Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

Files in nclark-lab/RERconverge Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

R Package Documentation

Browse R Packages

We want your feedback!

nclark-lab/RERconverge
Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

Files in nclark-lab/RERconverge
Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences