View source: R/in_silico_system.R
addGene | R Documentation |
Adds a gene in the in silico system with specified parameters if provided, or with parameters sampled according to the system parameters.
addGene( insilicosystem, coding = NULL, TargetReaction = NULL, TCrate = NULL, TLrate = NULL, RDrate = NULL, PDrate = NULL )
insilicosystem |
The in silico system (see |
coding |
String. The coding status of the gene (either "PC" for protein-coding or "NC" for noncoding). If none provided, randomly chosen according to the
parameter |
TargetReaction |
String. The biological function of the gene, i.e. the gene expression step targeted by the active product
of the gene. If none provided, randomly chosen according to the parameters |
TCrate |
Numeric. The transcription rate of the gene. If none provided, randomly chosen according to the
parameter |
TLrate |
Numeric. The translation rate of the gene. If none provided, randomly chosen according to the
parameter |
RDrate |
Numeric. The RNA decay rate of the gene. If none provided, randomly chosen according to the
parameter |
PDrate |
Numeric. The protein decay rate of the gene. If none provided, randomly chosen according to the
parameter |
The modified in silico system.
## Not run: mysystem = createInSilicoSystem(G = 5) mysystem$genes mysystem2 = addGene(mysystem, "PC", "TC", TCrate = 0.0001, TLrate = 0.001) mysystem2$genes mysystem3 = addGene(mysystem2) mysystem3$genes ## End(Not run)
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