mergePTMAbundance: Merge the original and PTM versions of the proteins.

In oliviaAB/sismonr: Simulation of in Silico Multi-Omic Networks

Merge the original and PTM versions of the proteins.

Description

Merge (i.e. sum) the abundance of the original and modified (PTM) versions of each protein in the results of a simulation.

Usage

mergePTMAbundance(df)

Arguments

df	A dataframe with the abundance of the different molecules over time (from simulateInSilicoSystem or simulateParallelInSilicoSystem).

Value

A dataframe in which the abundance of original and modified versions of a protein have been merged to give the abundance of the protein (without distinction of its post-translational modification state).

Examples

## Not run: 
mysystem = createInSilicoSystem(G = 5, PC.p = 1, PC.PTM.p = 0.9, regcomplexes = "none", ploidy = 1)
mypop = createInSilicoPopulation(1, mysystem)
sim = simulateInSilicoSystem(mysystem, mypop, 100)
head(sim$Simulation)
mergedPTM = mergePTMAbundance(sim$Simulation)
head(mergedPTM)

## End(Not run)

oliviaAB/sismonr documentation built on June 25, 2022, 11:59 p.m.