View source: R/in_silico_system.R
getEdges | R Documentation |
Returns a data-frame of the regulatory edges and associated properties in the in silico system.
getEdges(insilicosystem)
insilicosystem |
The in silico system (see |
A data-frame with the following columns:
from
: gene ID of the regulator, as a character;
to
: gene ID of the target, as an integer;
TargetReaction
: the ID of the reaction (as given by reaction
);
RegSign
: The sign of the reaction ("1" or "-1");
RegBy
: Is the regulator a protein-coding gene ("PC"), a noncoding gene ("NC") or a complex ("C")?
## Not run: mysystem = createInSilicoSystem(G = 10) getGenes(mysystem) ## End(Not run)
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