getEdges: Retrieves regulatory edges from in silico system

In oliviaAB/sismonr: Simulation of in Silico Multi-Omic Networks

Retrieves regulatory edges from in silico system

Description

Returns a data-frame of the regulatory edges and associated properties in the in silico system.

Usage

getEdges(insilicosystem)

Arguments

insilicosystem

The in silico system (see createInSilicoSystem).

Value

A data-frame with the following columns:

• from: gene ID of the regulator, as a character;

• to: gene ID of the target, as an integer;

• TargetReaction: the ID of the reaction (as given by reaction);

• RegSign: The sign of the reaction ("1" or "-1");

• RegBy: Is the regulator a protein-coding gene ("PC"), a noncoding gene ("NC") or a complex ("C")?

Examples

## Not run: 
mysystem = createInSilicoSystem(G = 10)
getGenes(mysystem)

## End(Not run)

oliviaAB/sismonr documentation built on Jan. 26, 2025, 10:20 a.m.