getComplexes: Retrieves regulatory complexes from in silico system

In oliviaAB/sismonr: Simulation of in Silico Multi-Omic Networks

Retrieves regulatory complexes from in silico system

Description

Returns a list of the regulatory complexes and associated properties in the in silico system.

Usage

getComplexes(insilicosystem)

Arguments

insilicosystem

The in silico system (see createInSilicoSystem).

Value

A named list, with one element per regulatory complex. Each element is itself a list, with the following components:

• complexes: a list of regulatory complexes composition. The names of the elements are the IDs of the complexes, and the values are vectors of gene IDs constituting each regulatory complex.

• formationrate: the formation rate of the complex.

• dissociationrate: the dissociation rate of the complex.

Examples

## Not run: 
mysystem = createInSilicoSystem(G = 20)
getComplexes(mysystem)

## End(Not run)

oliviaAB/sismonr documentation built on June 25, 2022, 11:59 p.m.