insilicoindividualargs: Constructor function for the 'insilicoindividualargs' class.

In oliviaAB/sismonr: Simulation of in Silico Multi-Omic Networks

Constructor function for the insilicoindividualargs class.

Description

Constructor function for the insilicoindividualargs class, with default values for the parameters if not provided by the user.

Usage

insilicoindividualargs(
  ngenevariants = 5,
  qtleffect_samplingfct = function(x) {
     truncnorm::rtruncnorm(x, a = 0, b = Inf,
    mean = 1, sd = 0.1)
 },
  initvar_samplingfct = function(x) {
     truncnorm::rtruncnorm(x, a = 0, b = Inf, mean
    = 1, sd = 0.1)
 }
)

Arguments

ngenevariants	Integer. Number of alleles existing for each gene and segregating in the in silico population. Default value is 5.
qtleffect_samplingfct	Function from which is sampled the value of a QTL effect coefficient (input x is the required sample size). Default value is a truncated normal distribution with mean 1 and sd 0.1 (only gives positive values).
initvar_samplingfct	Function from which is sampled the variation of the initial abundance of a species (input x is the required sample size). Default value is a truncated normal distribution with mean 1 and sd 0.1 (only gives positive values).

Value

An object of the class insilicoindividualargs, that is a named list of the different parameters.

Examples

indargs = insilicoindividualargs(ngenevariants = 3)

oliviaAB/sismonr documentation built on Jan. 26, 2025, 10:20 a.m.