View source: R/in_silico_system.R
getGenes | R Documentation |
Returns a data-frame of the genes and associated properties in the in silico system.
getGenes(insilicosystem)
insilicosystem |
The in silico system (see |
A data-frame with the following columns:
id
: Integer, ID of the genes;
coding
: coding status of the genes (either "PC" for protein-coding or "NC" for noncoding);
TargetReaction
: the biological function of the genes ("TC": transcription regulator, "TL": translation regulator, "RD": RNA decay
regulator, "PD": protein decay regulator, "PTM": post-translational modification regulator, "MR": metabolic enzyme);
PTMform
: Does the gene have a PTM form?
Active form
: what is the active form of the gene? "R" for noncoding genes, "P" for protein-coding genes,
"Pm" for protein-coding genes with a PTM form;
TCrate
: transcription rate of the genes;
TLrate
: translation rate of the genes;
RDrate
: RNA decay rate of the genes;
PDrate
: Protein decay rate of the genes.
## Not run: mysystem = createInSilicoSystem(G = 10) getGenes(mysystem) ## End(Not run)
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