View source: R/in_silico_system.R
getGRN | R Documentation |
Returns an igraph object (network) corresponding to the gene regulatory network of the insilico system, including all types of regulation of only those defined by the user.
getGRN(insilicosystem, edgeType = NULL, showAllVertices = F)
insilicosystem |
The in silico system (see |
edgeType |
The type of interactions to include in the network. If NULL (default value), all the interactions are included. Otherwise, can be either:
|
showAllVertices |
Display vertices that don't have any edge? Default is FALSE. |
## Not run: mysystem = createInSilicoSystem(G = 10) grn = getGRN(mysystem) grnTC = getGRN(mysystem, edgeType = "TC", showAllVertices = F) grnTCall = getGRN(mysystem, edgeType = "TC", showAllVertices = T) ## End(Not run)
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