init.compute_betas_from_shifts: Initialization for the computation of the optimal values

In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Initialization for the computation of the optimal values

Description

init.compute_betas_from_shifts initialize the vector of optimal values at nodes and tips, with the value at the root.

Usage

init.compute_betas_from_shifts(phy, optimal.value, ...)

Arguments

phy	Input tree.
optimal.value	the optimal value at the root of the tree

Details

This function is used in function compute_betas_from_shifts and is designed to furnish function update.compute_betas_from_shifts with the right structure of data.

Value

Matrix of size (Nnode + ntaxa)x1 of NAs, with the optimal value at the root.

pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.