shifts.list_to_matrix: Compute the matrix of shifts.
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/shifts_manipulations.R
shifts.list_to_matrix R Documentation
Compute the matrix of shifts.
Description
shifts.list_to_matrix takes the list description of the shifts
to give the matrix representation of the shifts : the b th element of
the lth line has the value of the shift on character l occurring on that branch b
Usage
shifts.list_to_matrix(phy, shifts, p = nrow(shifts$values))
Arguments
phy
Input tree.
shifts
list description of the shifts : shifts$edges, shifts$values.
p
number of traits (optional, needed when shifts = NULL).
Value
Matrix p x Nedge of length nbranch.
See Also
shifts.matrix_to_list
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/shifts_manipulations.R
| shifts.list_to_matrix | R Documentation |
Compute the matrix of shifts.
Description
shifts.list_to_matrix takes the list description of the shifts
to give the matrix representation of the shifts : the b th element of
the lth line has the value of the shift on character l occurring on that branch b
Usage
shifts.list_to_matrix(phy, shifts, p = nrow(shifts$values))
Arguments
phy |
Input tree. |
shifts |
list description of the shifts : shifts$edges, shifts$values. |
p |
number of traits (optional, needed when shifts = NULL). |
Value
Matrix p x Nedge of length nbranch.
See Also
shifts.matrix_to_list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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