shifts_to_simmap: Simmap format mapping from list of edges
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/shifts_manipulations.R
shifts_to_simmap R Documentation
Simmap format mapping from list of edges
Description
shifts_to_simmap takes a vector of edges where the shifts occur, and return a
simmap formatted tree, mapped with corresponding regimes.
Usage
shifts_to_simmap(tree, shifts_edges)
Arguments
tree
input tree in phylo format
shifts_edges
shifts positions on the edges
Details
Ancestral state is always 0, and other states are consecutive integers.
Value
tree a simmap object
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/shifts_manipulations.R
| shifts_to_simmap | R Documentation |
Simmap format mapping from list of edges
Description
shifts_to_simmap takes a vector of edges where the shifts occur, and return a
simmap formatted tree, mapped with corresponding regimes.
Usage
shifts_to_simmap(tree, shifts_edges)
Arguments
tree |
input tree in |
shifts_edges |
shifts positions on the edges |
Details
Ancestral state is always 0, and other states are consecutive integers.
Value
tree a simmap object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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