ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)
This package is for analysing high-thoughput sequencing repertoire data. It focuses on clonotype data sets pre-processd by ClonotypeR, rTCR and MiXCR. Clonotype tables from different samples are merged, filtered, normalised and tested for differential expression between groups of samples. Diversity indices are also studied. Results could be visualized in different ways.
Getting started
Browse package contents
Package details |
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| Author | H. P. Pham [aut, cre] |
| Maintainer | H. P. Pham <hp.pham@iltoopharma.fr> |
| License | GPL-3 + file LICENSE |
| Version | 0.0.1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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