parseRTCR: parse rTCR tables

In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)

Description

function imports clonotype tables produced by rTCR aligner.

Usage

parseRTCR(path)

Arguments

path	full path to a file returned by rTCR

Value

a data.table

Examples

## Not run: 
# The package RepSeqData contains example datasets 
l <- list.files(system.file(file.path('extdata/rtcr'), 
                 package = 'RepSeqData'), 
                 full.names = TRUE)
l
# first element of the vector
path <- l[1]
dataset <- parseRTCR(path, chain = "B")
dataset

## End(Not run)

ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.