raretabRepSeq: compute rarefaction table for a RepSeqExperiment object
In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)
Description
Usage
Arguments
Value
Examples
Description
function computes rarefaction table for each sample (libnames). The number of clontypes detected in the function of the number of sequences generated.
Usage
1
Arguments
x
an object of class RepSeqExperiment
Value
a data.table containing rarefaction table in order to be represented graphically as rarefaction curves.
Examples
1
2
3
4
5
6
7
## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
raretab <- raretabRepSeq(x = RepSeqData)
raretab
## End(Not run)
ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
function computes rarefaction table for each sample (libnames). The number of clontypes detected in the function of the number of sequences generated.
Usage
1 |
Arguments
x |
an object of class RepSeqExperiment |
Value
a data.table containing rarefaction table in order to be represented graphically as rarefaction curves.
Examples
1 2 3 4 5 6 7 | ## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
raretab <- raretabRepSeq(x = RepSeqData)
raretab
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.