renyiProfiles: compute Renyi's profile
In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)
Description
Usage
Arguments
Value
Examples
Description
function computes Renyi profile for all samples in a RepSeqExperiment object
Usage
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renyiProfiles(
x,
scales = c(0, 0.25, 0.5, 1, 2, 4, 8, 16, 32, 64, Inf),
level = c("VpJ", "V", "J", "VJ", "CDR3aa")
)
Arguments
x
an object of class RepSeqExperiment
scales
a numerical vector of alpha to evaluate Renyi's entropy
level
level of repertoire to assess Renyi profiles
Value
a data.table containing Renyi's profiles computed for each repertoire
Examples
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## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
renyiNumbers <- renyiProfiles(RepSeqData, level = "VpJ")
renyiNumbers
## End(Not run)
ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.
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Description Usage Arguments Value Examples
Description
function computes Renyi profile for all samples in a RepSeqExperiment object
Usage
1 2 3 4 5 | renyiProfiles(
x,
scales = c(0, 0.25, 0.5, 1, 2, 4, 8, 16, 32, 64, Inf),
level = c("VpJ", "V", "J", "VJ", "CDR3aa")
)
|
Arguments
x |
an object of class RepSeqExperiment |
scales |
a numerical vector of alpha to evaluate Renyi's entropy |
level |
level of repertoire to assess Renyi profiles |
Value
a data.table containing Renyi's profiles computed for each repertoire
Examples
1 2 3 4 5 6 7 | ## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
renyiNumbers <- renyiProfiles(RepSeqData, level = "VpJ")
renyiNumbers
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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