basicIndices: updates sample data with basic statistics
In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)
Description
Usage
Arguments
Value
Examples
View source: R/diversityFunctions.R
Description
function produces several useful diversity indices.
Usage
1
basicIndices(x, level = c("VpJ", "V", "J", "VJ", "CDR3aa"))
Arguments
x
an object of class RepSeqExperiment
level
level of reppertoire to assess diversity, choice are VpJ, V, J, VJ or CDR3aa)
Value
a data frame of Chao
Examples
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## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
divindices <- basicIndices(RepSeqData, level="VpJ")
divindices
## End(Not run)
ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.
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Description Usage Arguments Value Examples
View source: R/diversityFunctions.R
Description
function produces several useful diversity indices.
Usage
1 | basicIndices(x, level = c("VpJ", "V", "J", "VJ", "CDR3aa"))
|
Arguments
x |
an object of class RepSeqExperiment |
level |
level of reppertoire to assess diversity, choice are VpJ, V, J, VJ or CDR3aa) |
Value
a data frame of Chao
Examples
1 2 3 4 5 6 7 | ## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
divindices <- basicIndices(RepSeqData, level="VpJ")
divindices
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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